Non-Coding RNA Search

Ss1.1-Pig3-SRG8011M12.5

Sequence:


               
               GCGGACGCGTGGGTGCGGGTGACGCAGGCGCAGCTCGGGCGGCGCGCGCCGACCGCCCAT
CTTTGGTTGTCCCGCTCTCTTCGCGTCTACTCGGCCCAGTCACCGAGAGCCCCGCGTCTC
CCCCTCACCCGAATCCGTCCCCGTCGCGCGCCCGAGGGAAGGGGCGGGTCCAGGTTGCCC
GGAAAATCTGCCGGCCGGAGCGCGAGACTAACGGCCGCTGCCGCTCCCAGGTCCTCTCAG
ACCGCGCCATGGGTGACAGTGATGACGAGTATGATCGAAGGCGCAGGGACAAGTTTAGAA
GGGAACGCAGCGACTATGACCGTTCTCGGGAAAGAGATGAGAGACGTCGAGGGGATGATT
GGAATGACCGATAGTGGGACCGTGGCCGGGAGCGCCGCAGTCGGGGCGAGTACCGGGACT
ATGACAGGAACCGGAGGGAGCGCTTCTCTCCCCCCCGCCACGATCTCAGCCCCCCGCATA
AGCGCATGATGCGAGACTGGGATGATCACAGCTCTGACCCATACCACAGTGGCTATGATA
AGCCCAAGGAAGAAGAACGGGAGAAGCCTAAGGATGCCCCTGGGCTGGAATGTAAACCCC
GACCCCTGCACAAGACTTGCTCTCTCTTCATGCGCAACATCGCACCCAACATCTCCCGGG
CTGAAATCATTTCTCTTTGTAAAAGATATCCAGGCTTCATGCGTGTGGCACTCTCGGAGC
CCCATCCCGAGAGGATGTTTTTCCGTCGTGGCTGGGTGACCTTTGACCGCAGCGTTAATA
TCAAAGAGATCTGTTGGAACCTGCAGAATATCCGACTACGGGAGTGTGAGATGAGCCCTG
GCGTGAACAGAGACATGACTCGTCGTGTCCGCAACATCAACGGCATCACGCAGCACAAGC
AGATAGTACGAAATGACAAAACTAAGAAATCTGAGGGTGACGGGGATAAGGAAGAGAAGA
AAGAAGACGCTGAGAAAGAAACCAAAAAGAGCAGCAAGAAGCGGAATAGGAAGCATAGTG
GTGACGACAGCTTTGATGAAGGCAGTGTGTCTGAGTCGGAGTCCGAGTCTGAGAGTGGCC
AGGCTGAGGAGGAGAAGGAGGAGGCTGAAGATGCAGTCAAGGAAAAGGAGAAGCCCAAGG
AAGAAGAACGGGAGAAGCCACCCAGACGTCCACATCATGCAGCATCACGTTCTGCCTATC
CAGGCCAGGCTGGGCAGCATCGCTGAGATTGACTTGGGCGTGCCGCCGCCCGTGATGAAG
ACCTTCAAGGAATTTCTCCTGTCACTGGATGACTCTGTGGATGAGACAGAGGCAGTTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGACGCGTGGGTGCGGGTGACGCAGGCGCAGCTCGGGCGGCGCGCGCCGACCGCCCAT
CTTTGGTTGTCCCGCTCTCTTCGCGTCTACTCGGCCCAGTCACCGAGAGCCCCGCGTCTC
CCCCTCACCCGAATCCGTCCCCGTCGCGCGCCCGAGGGAAGGGGCGGGTCCAGGTTGCCC
GGAAAATCTGCCGGCCGGAGCGCGAGACTAACGGCCGCTGCCGCTCCCAGGTCCTCTCAG
ACCGCGCCATGGGTGACAGTGATGACGAGTATGATCGAAGGCGCAGGGACAAGTTTAGAA
GGGAACGCAGCGACTATGACCGTTCTCGGGAAAGAGATGAGAGACGTCGAGGGGATGATT
GGAATGACCGATAGTGGGACCGTGGCCGGGAGCGCCGCAGTCGGGGCGAGTACCGGGACT
ATGACAGGAACCGGAGGGAGCGCTTCTCTCCCCCCCGCCACGATCTCAGCCCCCCGCATA
AGCGCATGATGCGAGACTGGGATGATCACAGCTCTGACCCATACCACAGTGGCTATGATA
AGCCCAAGGAAGAAGAACGGGAGAAGCCTAAGGATGCCCCTGGGCTGGAATGTAAACCCC
GACCCCTGCACAAGACTTGCTCTCTCTTCATGCGCAACATCGCACCCAACATCTCCCGGG
CTGAAATCATTTCTCTTTGTAAAAGATATCCAGGCTTCATGCGTGTGGCACTCTCGGAGC
CCCATCCCGAGAGGATGTTTTTCCGTCGTGGCTGGGTGACCTTTGACCGCAGCGTTAATA
TCAAAGAGATCTGTTGGAACCTGCAGAATATCCGACTACGGGAGTGTGAGATGAGCCCTG
GCGTGAACAGAGACATGACTCGTCGTGTCCGCAACATCAACGGCATCACGCAGCACAAGC
AGATAGTACGAAATGACAAAACTAAGAAATCTGAGGGTGACGGGGATAAGGAAGAGAAGA
AAGAAGACGCTGAGAAAGAAACCAAAAAGAGCAGCAAGAAGCGGAATAGGAAGCATAGTG
GTGACGACAGCTTTGATGAAGGCAGTGTGTCTGAGTCGGAGTCCGAGTCTGAGAGTGGCC
AGGCTGAGGAGGAGAAGGAGGAGGCTGAAGATGCAGTCAAGGAAAAGGAGAAGCCCAAGG
AAGAAGAACGGGAGAAGCCACCCAGACGTCCACATCATGCAGCATCACGTTCTGCCTATC
CAGGCCAGGCTGGGCAGCATCGCTGAGATTGACTTGGGCGTGCCGCCGCCCGTGATGAAG
ACCTTCAAGGAATTTCTCCTGTCACTGGATGACTCTGTGGATGAGACAGAGGCAGTTAAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-232, gnl|bosTau2|chr25 (32194636-32194404)
               

               
               2-232, gnl|Hg17|chr7 (100117390-100117602)
               

               
               2-232, gnl|Mm7|chr5 (136225903-136225690)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-232, gnl|bosTau2|chr25 (32194636-32194404)
               

               
               2-232, gnl|Hg17|chr7 (100117390-100117602)
               

               
               2-232, gnl|Mm7|chr5 (136225903-136225690)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	2-232, gnl\|bosTau2\|chr25 (32194636-32194404)
	2-232, gnl\|Hg17\|chr7 (100117390-100117602)
	2-232, gnl\|Mm7\|chr5 (136225903-136225690)