Non-Coding RNA Search

Ss1.1-Pig3-SRG8011M20.5

Sequence:


               
               CCGGTGACGCCTCTTCCCTTCTCTCCTGCCGCCCAGGCTCCGGCTCTCGGTGCGGCAGCG
CCATCTGGTGCCGAGTGTCTCGCCGCCCGCGGAGGGGGCGCGCGCCTTTCGGAACCTTCC
AGAGAAAACGCGGCCCCGGTTCTGCTCTGTCCCGCCCTCGGGAAGGGAGAGACCAGAGGC
TCCGCCCTGCCGAGTTCCCGCGCAGGAGGGACGCAGGGAGAAGACGACAACCATCTCTGA
ACCAGGGAGAGAGCCCTGACCAAGAACCAAATCTGCTGGTGCCTTGATCTCCAGAGCTGT
GAAGAATTCATGTATGTTGTTTAAACCTCCCAGTCCATGGTATTTTATTATATAAGACTG
AGGATATAATTATATATATATAATTATATAAGACGTGGATATTATTTTCAGATTTTAGGA
GCTTTTATAAACTAAGGCAGTTACTGATATTATAGGTAATATCCTGAAAATAGTATGTAT
TTACCTGTTTACACAGCTATAGCACAATACAACTTTTTTGAAGATGTTTCATATATATAT
ATGTGTGTGTGTGTATATATATATATATTTCTCTATTACAACTTTAAATTGGTTTGAAAA
CAAATTCAAATTCATAGGTTTTAAGCTTTTTTTTAAAGGTCAAAACAGTCTCTATATAGA
CTGTTTCAAAGCATAGTATCGTAAGGAAACAGAGGAAATTATTTTAAAGGGAAAAGGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGTGACGCCTCTTCCCTTCTCTCCTGCCGCCCAGGCTCCGGCTCTCGGTGCGGCAGCG
CCATCTGGTGCCGAGTGTCTCGCCGCCCGCGGAGGGGGCGCGCGCCTTTCGGAACCTTCC
AGAGAAAACGCGGCCCCGGTTCTGCTCTGTCCCGCCCTCGGGAAGGGAGAGACCAGAGGC
TCCGCCCTGCCGAGTTCCCGCGCAGGAGGGACGCAGGGAGAAGACGACAACCATCTCTGA
ACCAGGGAGAGAGCCCTGACCAAGAACCAAATCTGCTGGTGCCTTGATCTCCAGAGCTGT
GAAGAATTCATGTATGTTGTTTAAACCTCCCAGTCCATGGTATTTTATTATATAAGACTG
AGGATATAATTATATATATATAATTATATAAGACGTGGATATTATTTTCAGATTTTAGGA
GCTTTTATAAACTAAGGCAGTTACTGATATTATAGGTAATATCCTGAAAATAGTATGTAT
TTACCTGTTTACACAGCTATAGCACAATACAACTTTTTTGAAGATGTTTCATATATATAT
ATGTGTGTGTGTGTATATATATATATATTTCTCTATTACAACTTTAAATTGGTTTGAAAA
CAAATTCAAATTCATAGGTTTTAAGCTTTTTTTTAAAGGTCAAAACAGTCTCTATATAGA
CTGTTTCAAAGCATAGTATCGTAAGGAAACAGAGGAAATTATTTTAAAGGGAAAAGGATT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               3-212, gnl|bosTau2|chr12 (14778767-14778556)
               

               
               3-212, gnl|canFam2|chr25 (9709521-9708964)
               

               
               3-212, gnl|dasNov1|scaffold_207612 (470-923)
               

               
               3-212, gnl|echTel1|scaffold_276599 (46057-46537)
               

               
               3-212, gnl|hg17|chr13 (33014557-33015067)
               

               
               3-212, gnl|Hg17|chr13 (33014908-33015120)
               

               
               3-212, gnl|loxAfr1|scaffold_4417 (479-6)
               

               
               3-212, gnl|mm7|chr5 (150300856-150301368)
               

               
               3-212, gnl|Mm7|chr5 (150301205-150301420)
               

               
               3-212, gnl|oryCun1|scaffold_198146 (76743-77290)
               

               
               3-212, gnl|panTro1|chr14 (32216323-32216833)
               

               
               3-212, gnl|rheMac2|chr17 (12917973-12918482)
               

               
               3-212, gnl|rn3|chr12 (3345723-3345226)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-212, gnl|bosTau2|chr12 (14778767-14778556)
               

               
               3-212, gnl|canFam2|chr25 (9709521-9708964)
               

               
               3-212, gnl|dasNov1|scaffold_207612 (470-923)
               

               
               3-212, gnl|echTel1|scaffold_276599 (46057-46537)
               

               
               3-212, gnl|hg17|chr13 (33014557-33015067)
               

               
               3-212, gnl|Hg17|chr13 (33014908-33015120)
               

               
               3-212, gnl|loxAfr1|scaffold_4417 (479-6)
               

               
               3-212, gnl|mm7|chr5 (150300856-150301368)
               

               
               3-212, gnl|Mm7|chr5 (150301205-150301420)
               

               
               3-212, gnl|oryCun1|scaffold_198146 (76743-77290)
               

               
               3-212, gnl|panTro1|chr14 (32216323-32216833)
               

               
               3-212, gnl|rheMac2|chr17 (12917973-12918482)
               

               
               3-212, gnl|rn3|chr12 (3345723-3345226)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	3-212, gnl\|bosTau2\|chr12 (14778767-14778556)
	3-212, gnl\|canFam2\|chr25 (9709521-9708964)
	3-212, gnl\|dasNov1\|scaffold_207612 (470-923)
	3-212, gnl\|echTel1\|scaffold_276599 (46057-46537)
	3-212, gnl\|hg17\|chr13 (33014557-33015067)
	3-212, gnl\|Hg17\|chr13 (33014908-33015120)
	3-212, gnl\|loxAfr1\|scaffold_4417 (479-6)
	3-212, gnl\|mm7\|chr5 (150300856-150301368)
	3-212, gnl\|Mm7\|chr5 (150301205-150301420)
	3-212, gnl\|oryCun1\|scaffold_198146 (76743-77290)
	3-212, gnl\|panTro1\|chr14 (32216323-32216833)
	3-212, gnl\|rheMac2\|chr17 (12917973-12918482)
	3-212, gnl\|rn3\|chr12 (3345723-3345226)