Non-Coding RNA Search

Ss1.1-Pig3-SRG8011O01.5

Sequence:


               
               TTTTTTTTTTTTTTTTCTTTTTTTTTGGAAACCAAAGCTGTCTCAGAAATGGCCGATTTA
ACTTTACAGTAACAATAGACAGCACAACACAAACTCTCTCAATACAGATAAACTCACACA
TACTGGAGATATATATAATAGATATATAGAGAAAATTATTTTAATGCATTGTAGTGTAAT
ATTTATGCATACTATACTGTATAACATGTTATTCAAAAGGGATATGCCATTTCTGAGACA
CGATAACAAAAAAAAGTTTGAGGAAATTATTTTGCTTCTATTTATAGCTCTGTCAAAAGT
CAAAAGACTCTAAATGCTTTGCAAAAATGGTTTCACATTTGCTTAAATGCTTCATCACAG
TCACATTTAAAATAGTGACTCTAAACAAAGAAGAAAGCAGCACTGTCATCAGATGCATGA
TAAACCAAAATATGAAAATGGGAAATGTTTAATTAACCTAGTAATTGGGTGGGTTAAGTA
CATGGGTGACTTTTATATGTGATTTGTTTTGTTTTGTTTTGTTCAGATTTACTGCTTATA
GCCTTAGAAAGCCTTTTACAAAATTAAAAAAAAAATAGATGTGCATTCAGTTTTTAAGAA
TGGATTCATCCAAAGGAATTCCTTTTTTTGTGGTTTGGATGTTGCAGCTAGTAAAGGATA
TTTTTGCTCTGTTCAGCAGTTCTAAAAATTGCTGAAGTAGGGGCCAGGTCACTGGTAGTT
CTAGTGTGGAATGGGAGAAGTGAAAGTTCAGTTATAGAACTTTCCATACTTCCAAGTTTA
CTGCAAGTTTTTATGCTTGAGAGAGATGCTTTCTAATATAAGACTGATGTGTTGATTTTA
CTGATTGTACTGTACATCTATTAAAGCCTTAGATTATTACATTACGGGTTGGAACCCATA
CCAATGTAATTTCAATCGTGTTAAGAGAGTAATGGTGACTCCACATGTTATTGTAGTTAG
TTACATTATAGAATATTACTTATTTTTCTTGTTAAAATGTAGTTTTTCATTTCCTACATT
TATTAGATTTCATTTTCTATTAACAATTGAATACCATTTCAGTTTATAGACTATTGTTTT
GTTAGATTTTACCGATGAATTTTTCAAAATACAAAAAAAAAATTAAAGTAGTTTTTCCTT
CATAACATACTCAGTTTTGAATTACATGTAGTGTCATATGAATATTCGTATTGTTAACTA
AATGATTTATATTTTACTGATTTAATATTAAAGTGTAAGAATGTCAGTCATTGTTAGTTC
TTGTCTAGTTTTCATTAAAAGAACAAAGATCTTTTATATGGATATCTTATAAATATATAA
TCATTGCTAAGTAAGAAGTTAAGTTGTTGCTATCGCAACAATCCTGGCAGACAATTGAGT
AATATTTTGATGATTTATTTTGTTTGTAATTAGTTATTATAAGAAGATCTAGATCCTAGA
TATTAGAATAAAATTTATTTTCTACTGTATCCATTTCAAATGTTAAAGTATTGTTTAATA
TTTTTGAAATCCCTGAATATCAGGCCTTGTTATAAATAAGCTGCATAATCAATAAATAGA
ACAAGGGACTTTTTGTTGATAATCCAAATACTCAAAGTTTACGTAATGAGAATTATAGCG
TGTGTGCAAACTCTTGAGGGTTGATTATGCTGCAATTTAGCATGTTGGAACGTCTAGAGA
GAAGGTTGACTTTTTGCACTTCTGTATATAGTCAAAAGAGAGAAACCTGTATAATAGTAA
GATCTTATTTTGAATAAAAACGTCTATAATTACAAGGAGTTTTGTTAAGGCTAATAAAAC
GACAGACTGAGCAAAATTGCTTGCAAACGTGGCACAGAGTTAGCACTCCACACCCCTTCA
AACATGTTGCTTTGCTTTTTGTGGACAGCTTGTAGTTTGCCAGGATTTTTTCAGCTGGAA
AGATATGCCATCCTTCCGAGATCTCATGACTGACAAAAACTCCATTGGGCCAAATCTGCC
TGAAGATCATTACCAAAAATAGCAGGTACTTCAACCATTAAGGTGAAATCATGGATCAAA
TATTCCTTACATTTTTCAAAACTACTGCATGTTTAAAACTTCAACAAAACAAAACAAAAA
AAGAACTATACTAAGGACATATACTATTCAAATCAGTTTCTGCCAATTTCAGTGGTTTAT
TGTTCACACAACAAAAGAAAAAAATCTTCAAAACAAGCATTGACTTTCACAAAATTTAAA
CCATAAACAGGCAAACCAAACAGCACACCGTAGCTATAGTTGTTATGTGATTGTTTTTTA
ATTGCTGTAGGATCCTGTTCTTTCAGCAGGTGAAAAAAAATAAAACACAGTTCAAATTTC
ACGGTTTTAATTTTCAACTCAGAAGCACTCAAAAAAGCAAATGTGATAATGGGCACTTGT
TTAATGAATTAGCATAGCCAGCCTTCACTCCAGCTGGTGATAATGTTGCACTTATCAGCA
ACCCTACCGCTTTCATCTGCTGAAAGGACAGATGTGCTTGGTTTTACTATTATGTAATCA
CAACTTACTTTCTGCTTGTAGTTGCTTAAAATTATGTATTTTGTCTTGGGCTGCAATTTG
TTTTATGCTTATTTTATTATTACTGCAGTAGTTGACTTTGCTGTATGGAAAAATAAAGTG
AAATTGCCCTAATAAAACTTCTCTTTCTTAAGTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTCTTTTTTTTTGGAAACCAAAGCTGTCTCAGAAATGGCCGATTTA
ACTTTACAGTAACAATAGACAGCACAACACAAACTCTCTCAATACAGATAAACTCACACA
TACTGGAGATATATATAATAGATATATAGAGAAAATTATTTTAATGCATTGTAGTGTAAT
ATTTATGCATACTATACTGTATAACATGTTATTCAAAAGGGATATGCCATTTCTGAGACA
CGATAACAAAAAAAAGTTTGAGGAAATTATTTTGCTTCTATTTATAGCTCTGTCAAAAGT
CAAAAGACTCTAAATGCTTTGCAAAAATGGTTTCACATTTGCTTAAATGCTTCATCACAG
TCACATTTAAAATAGTGACTCTAAACAAAGAAGAAAGCAGCACTGTCATCAGATGCATGA
TAAACCAAAATATGAAAATGGGAAATGTTTAATTAACCTAGTAATTGGGTGGGTTAAGTA
CATGGGTGACTTTTATATGTGATTTGTTTTGTTTTGTTTTGTTCAGATTTACTGCTTATA
GCCTTAGAAAGCCTTTTACAAAATTAAAAAAAAAATAGATGTGCATTCAGTTTTTAAGAA
TGGATTCATCCAAAGGAATTCCTTTTTTTGTGGTTTGGATGTTGCAGCTAGTAAAGGATA
TTTTTGCTCTGTTCAGCAGTTCTAAAAATTGCTGAAGTAGGGGCCAGGTCACTGGTAGTT
CTAGTGTGGAATGGGAGAAGTGAAAGTTCAGTTATAGAACTTTCCATACTTCCAAGTTTA
CTGCAAGTTTTTATGCTTGAGAGAGATGCTTTCTAATATAAGACTGATGTGTTGATTTTA
CTGATTGTACTGTACATCTATTAAAGCCTTAGATTATTACATTACGGGTTGGAACCCATA
CCAATGTAATTTCAATCGTGTTAAGAGAGTAATGGTGACTCCACATGTTATTGTAGTTAG
TTACATTATAGAATATTACTTATTTTTCTTGTTAAAATGTAGTTTTTCATTTCCTACATT
TATTAGATTTCATTTTCTATTAACAATTGAATACCATTTCAGTTTATAGACTATTGTTTT
GTTAGATTTTACCGATGAATTTTTCAAAATACAAAAAAAAAATTAAAGTAGTTTTTCCTT
CATAACATACTCAGTTTTGAATTACATGTAGTGTCATATGAATATTCGTATTGTTAACTA
AATGATTTATATTTTACTGATTTAATATTAAAGTGTAAGAATGTCAGTCATTGTTAGTTC
TTGTCTAGTTTTCATTAAAAGAACAAAGATCTTTTATATGGATATCTTATAAATATATAA
TCATTGCTAAGTAAGAAGTTAAGTTGTTGCTATCGCAACAATCCTGGCAGACAATTGAGT
AATATTTTGATGATTTATTTTGTTTGTAATTAGTTATTATAAGAAGATCTAGATCCTAGA
TATTAGAATAAAATTTATTTTCTACTGTATCCATTTCAAATGTTAAAGTATTGTTTAATA
TTTTTGAAATCCCTGAATATCAGGCCTTGTTATAAATAAGCTGCATAATCAATAAATAGA
ACAAGGGACTTTTTGTTGATAATCCAAATACTCAAAGTTTACGTAATGAGAATTATAGCG
TGTGTGCAAACTCTTGAGGGTTGATTATGCTGCAATTTAGCATGTTGGAACGTCTAGAGA
GAAGGTTGACTTTTTGCACTTCTGTATATAGTCAAAAGAGAGAAACCTGTATAATAGTAA
GATCTTATTTTGAATAAAAACGTCTATAATTACAAGGAGTTTTGTTAAGGCTAATAAAAC
GACAGACTGAGCAAAATTGCTTGCAAACGTGGCACAGAGTTAGCACTCCACACCCCTTCA
AACATGTTGCTTTGCTTTTTGTGGACAGCTTGTAGTTTGCCAGGATTTTTTCAGCTGGAA
AGATATGCCATCCTTCCGAGATCTCATGACTGACAAAAACTCCATTGGGCCAAATCTGCC
TGAAGATCATTACCAAAAATAGCAGGTACTTCAACCATTAAGGTGAAATCATGGATCAAA
TATTCCTTACATTTTTCAAAACTACTGCATGTTTAAAACTTCAACAAAACAAAACAAAAA
AAGAACTATACTAAGGACATATACTATTCAAATCAGTTTCTGCCAATTTCAGTGGTTTAT
TGTTCACACAACAAAAGAAAAAAATCTTCAAAACAAGCATTGACTTTCACAAAATTTAAA
CCATAAACAGGCAAACCAAACAGCACACCGTAGCTATAGTTGTTATGTGATTGTTTTTTA
ATTGCTGTAGGATCCTGTTCTTTCAGCAGGTGAAAAAAAATAAAACACAGTTCAAATTTC
ACGGTTTTAATTTTCAACTCAGAAGCACTCAAAAAAGCAAATGTGATAATGGGCACTTGT
TTAATGAATTAGCATAGCCAGCCTTCACTCCAGCTGGTGATAATGTTGCACTTATCAGCA
ACCCTACCGCTTTCATCTGCTGAAAGGACAGATGTGCTTGGTTTTACTATTATGTAATCA
CAACTTACTTTCTGCTTGTAGTTGCTTAAAATTATGTATTTTGTCTTGGGCTGCAATTTG
TTTTATGCTTATTTTATTATTACTGCAGTAGTTGACTTTGCTGTATGGAAAAATAAAGTG
AAATTGCCCTAATAAAACTTCTCTTTCTTAAGTAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               8-172, gnl|bosTau2|chr22 (38048015-38048180)
               

               
               8-172, gnl|Hg17|chr3 (153663624-153663766)
               

               
               8-172, gnl|Mm7|chr3 (60783659-60783806)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-172, gnl|bosTau2|chr22 (38048015-38048180)
               

               
               8-172, gnl|Hg17|chr3 (153663624-153663766)
               

               
               8-172, gnl|Mm7|chr3 (60783659-60783806)

Expressed library(ies): 48 entry(ies)

More info

Expressed library(ies): 48 entry(ies)

Help | Less info


               
               tbr (1.54178)
               

               
               cbl (1.37757)
               

               
               gul (1.06553)
               

               
               vin (0.997672)
               

               
               lin (0.873617)
               

               
               tra (0.861645)
               

               
               thg (0.760746)
               

               
               ski (0.733676)
               

               
               spl (0.715922)
               

               
               rec (0.692281)
               

               
               sug (0.636456)
               

               
               liv (0.585137)
               

               
               jca (0.569801)
               

               
               ste (0.540833)
               

               
               isp (0.451128)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               tes (0.415628)
               

               
               aor (0.390549)
               

               
               fbs (0.350693)
               

               
               mcp (0.341297)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               ldo (0.291008)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               clu (0.239292)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 48 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (1.54178)
               

               
               cbl (1.37757)
               

               
               gul (1.06553)
               

               
               vin (0.997672)
               

               
               lin (0.873617)
               

               
               tra (0.861645)
               

               
               thg (0.760746)
               

               
               ski (0.733676)
               

               
               spl (0.715922)
               

               
               rec (0.692281)
               

               
               sug (0.636456)
               

               
               liv (0.585137)
               

               
               jca (0.569801)
               

               
               ste (0.540833)
               

               
               isp (0.451128)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               tes (0.415628)
               

               
               aor (0.390549)
               

               
               fbs (0.350693)
               

               
               mcp (0.341297)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               ldo (0.291008)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               clu (0.239292)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	8-172, gnl\|bosTau2\|chr22 (38048015-38048180)
	8-172, gnl\|Hg17\|chr3 (153663624-153663766)
	8-172, gnl\|Mm7\|chr3 (60783659-60783806)

	tbr (1.54178)
	cbl (1.37757)
	gul (1.06553)
	vin (0.997672)
	lin (0.873617)
	tra (0.861645)
	thg (0.760746)
	ski (0.733676)
	spl (0.715922)
	rec (0.692281)
	sug (0.636456)
	liv (0.585137)
	jca (0.569801)
	ste (0.540833)
	isp (0.451128)
	amn (0.417711)
	cty (0.41632)
	tes (0.415628)
	aor (0.390549)
	fbs (0.350693)
	mcp (0.341297)
	spc (0.340097)
	fco (0.314416)
	bfe (0.299715)
	ldo (0.291008)
	ret (0.257467)
	bla (0.248694)
	clu (0.239292)
	mas (0.210305)
	hea (0.204499)
	nbm (0.198649)
	col (0.195008)
	nlu (0.191681)
	sto (0.179824)
	fty (0.17584)
	ton (0.1755)
	sin (0.174948)
	fhi (0.169578)
	nco (0.161734)
	fat (0.147427)
	ssp (0.13552)
	pla (0.133672)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	med (0.116252)
	jej (0.0989218)
	eje (0.0988338)