Non-Coding RNA Search

Ss1.1-Pig3-SRG8011O14.5

Sequence:


               
               GTCACCAAGTCTTTAGAATAGCTTTACCCTCCTCCGACCCGGTTGCTTTCGTGGAGTGTT
TCGTTTGGCTTTTCTTTATTTCCCTCCCTCCTGCAACCCCTGCCCCCAGCGCACCCCCCC
CCCCCGCGCTTCTGGAAGGTTTTGTTTGGTCCTTTTTTCAGTTTGTGCCACGTGGCTACA
TTAGTTAATGTTTATCGAGTTCATTGGTCAATATTTGACCCATTCTTATTTCAATTTCTC
CTTTTAAATATGTAGATTGAGAGAAGAACCTCATGATTCTACCAAAATTTTTATCAACAG
CTGTTTAAAGTCTTTGTAGCGTTGAAAAAATATATATATATACATAACTGTTATGTAGTT
CGGATAGCTTAGTTTTAAAAGACTGATTAAAAAAGCAAAAGGAAAAAAAAAAAAGAAGCA
ATTTTGAAGCAGCCCTCCAAAAGGAGTGGGTTCTGTATTATTTGTATTAAATACGAGCTT
GCGAACCAATCATTTTACATCTGGTTTTTAAACCATAAGGGCACGACGAATGCAGTGCCA
TATACTTTTTTTTTTTTTTCTGTGTGAAACAACTTTTATTGTGATGTTACTGGTTATGGT
TTAAATGTACAGAAACAAAGGGTTAAAATGTGTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCACCAAGTCTTTAGAATAGCTTTACCCTCCTCCGACCCGGTTGCTTTCGTGGAGTGTT
TCGTTTGGCTTTTCTTTATTTCCCTCCCTCCTGCAACCCCTGCCCCCAGCGCACCCCCCC
CCCCCGCGCTTCTGGAAGGTTTTGTTTGGTCCTTTTTTCAGTTTGTGCCACGTGGCTACA
TTAGTTAATGTTTATCGAGTTCATTGGTCAATATTTGACCCATTCTTATTTCAATTTCTC
CTTTTAAATATGTAGATTGAGAGAAGAACCTCATGATTCTACCAAAATTTTTATCAACAG
CTGTTTAAAGTCTTTGTAGCGTTGAAAAAATATATATATATACATAACTGTTATGTAGTT
CGGATAGCTTAGTTTTAAAAGACTGATTAAAAAAGCAAAAGGAAAAAAAAAAAAGAAGCA
ATTTTGAAGCAGCCCTCCAAAAGGAGTGGGTTCTGTATTATTTGTATTAAATACGAGCTT
GCGAACCAATCATTTTACATCTGGTTTTTAAACCATAAGGGCACGACGAATGCAGTGCCA
TATACTTTTTTTTTTTTTTCTGTGTGAAACAACTTTTATTGTGATGTTACTGGTTATGGT
TTAAATGTACAGAAACAAAGGGTTAAAATGTGTTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               430-542, - strand, RNAz p=0.792573

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               430-542, - strand, RNAz p=0.792573

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-636, gnl|bosTau2|chr26 (22521484-22522101)
               

               
               1-636, gnl|Hg17|chr10 (114915701-114916292)
               

               
               1-636, gnl|Mm7|chr19 (55846813-55847433)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr26 (22521484-22522101)
               

               
               1-636, gnl|Hg17|chr10 (114915701-114916292)
               

               
               1-636, gnl|Mm7|chr19 (55846813-55847433)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	1-636, gnl\|bosTau2\|chr26 (22521484-22522101)
	1-636, gnl\|Hg17\|chr10 (114915701-114916292)
	1-636, gnl\|Mm7\|chr19 (55846813-55847433)