Non-Coding RNA Search

Ss1.1-Pig3-SRG8012A07.3

Sequence:


               
               CAAACACCAGATAGGTGAAGCTGCACTTTTCCTCCCTTTATAGAAAGGAACATAGTGAGT
CAGCCTTTCTCCTGTGTAGGGGTTTCTTCCAGCAGAACAGAGACATTGCCAACCATTTGG
GATCTGCTTGCTGTCCGAGTACAGCAATAGAAATCTTCCTGGGCAAATTACCATCAGTGA
GTTAACAGACAGTCTTTCTGCTGCCTAGGGTTTCTGTGCAGATAAACAGAAATGCTCTGA
TTAGAAAGGAAATGAATGGTTTCACTCAAATGTCCTGCAATTTAGGATTGCAGATTTCTG
TCTTGAAATACCTGTTTCCTTGGGACATTCTGTCCTGGAGATTTTTGGTTTGGGTGTTTT
TTGTTTTCTGGGGAATGACATGTTTGGGGTCTTTCATACATGAGAAATCGGTAGAACAGT
GATATCAGAAAGCATTTTTTACTTCTGAACAAAATGCCTTTTTGTTTACCTGCAGTGTAC
AATTGTTTGGGATTTTTCGTTTGTCTGTTTCTTTGTTTGGAATTTTCCCCTCCCTTTAGC
CAGATCAGTATTGATGAGGCTGATCATTTGGCATTTTTTTCCCCTTCCAGAAGAGTTGCA
TCAACAAAGTTAATTGTATTTATGTATGTAAATAGATTTTAAGCTTCGTTATAAAATATT
GTTAATACCTGTAATAATTTTTTCAATTTTTTGTGTGTTTCTAAGGACCTTTTCTTATGT
TTGCTAAATACTGTAGACAAAAAAAAAAAATGCTTCTTTCTACTTGGTTTATTTTAGACT
TAAAAATGAACTACTTTTGATTCACTTTTGTAAAGAGTTAATAGCATGGTTCCAATTTTT
TTTTAAAGAAGTTCACTTTTTGTTCTGGGGAAATGAATGTGCAAAAAACAAAAAGAGAGA
GAGAGAGAACTGTTGGTTCTTTGTGCTATTCTGGATGTATAAAAATCAATGGAAAAAAAA
TAAACTTCCAAATTGAAATGACAGTATAACACATCTGTTGAAAAAGTAATACTGGGAAAT
GCATATACTTGACGAGGCCCCGCCTCATGTCTATTTGTGTAGCAGTTACTGGATCTGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACACCAGATAGGTGAAGCTGCACTTTTCCTCCCTTTATAGAAAGGAACATAGTGAGT
CAGCCTTTCTCCTGTGTAGGGGTTTCTTCCAGCAGAACAGAGACATTGCCAACCATTTGG
GATCTGCTTGCTGTCCGAGTACAGCAATAGAAATCTTCCTGGGCAAATTACCATCAGTGA
GTTAACAGACAGTCTTTCTGCTGCCTAGGGTTTCTGTGCAGATAAACAGAAATGCTCTGA
TTAGAAAGGAAATGAATGGTTTCACTCAAATGTCCTGCAATTTAGGATTGCAGATTTCTG
TCTTGAAATACCTGTTTCCTTGGGACATTCTGTCCTGGAGATTTTTGGTTTGGGTGTTTT
TTGTTTTCTGGGGAATGACATGTTTGGGGTCTTTCATACATGAGAAATCGGTAGAACAGT
GATATCAGAAAGCATTTTTTACTTCTGAACAAAATGCCTTTTTGTTTACCTGCAGTGTAC
AATTGTTTGGGATTTTTCGTTTGTCTGTTTCTTTGTTTGGAATTTTCCCCTCCCTTTAGC
CAGATCAGTATTGATGAGGCTGATCATTTGGCATTTTTTTCCCCTTCCAGAAGAGTTGCA
TCAACAAAGTTAATTGTATTTATGTATGTAAATAGATTTTAAGCTTCGTTATAAAATATT
GTTAATACCTGTAATAATTTTTTCAATTTTTTGTGTGTTTCTAAGGACCTTTTCTTATGT
TTGCTAAATACTGTAGACAAAAAAAAAAAATGCTTCTTTCTACTTGGTTTATTTTAGACT
TAAAAATGAACTACTTTTGATTCACTTTTGTAAAGAGTTAATAGCATGGTTCCAATTTTT
TTTTAAAGAAGTTCACTTTTTGTTCTGGGGAAATGAATGTGCAAAAAACAAAAAGAGAGA
GAGAGAGAACTGTTGGTTCTTTGTGCTATTCTGGATGTATAAAAATCAATGGAAAAAAAA
TAAACTTCCAAATTGAAATGACAGTATAACACATCTGTTGAAAAAGTAATACTGGGAAAT
GCATATACTTGACGAGGCCCCGCCTCATGTCTATTTGTGTAGCAGTTACTGGATCTGTTC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               88-204, - strand, RNAz p=0.763598
               

               
               245-342, + strand, RNAz p=0.933541
               

               
               499-608, - strand, RNAz p=0.989704

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-204, - strand, RNAz p=0.763598
               

               
               245-342, + strand, RNAz p=0.933541
               

               
               499-608, - strand, RNAz p=0.989704

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of D43969, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of D43969, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-1080, gnl|bosTau2|chr1 (95939341-95940401)
               

               
               14-1080, gnl|Hg17|chr21 (35083379-35082350)
               

               
               14-1080, gnl|Mm7|chr16 (92657119-92655972)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-1080, gnl|bosTau2|chr1 (95939341-95940401)
               

               
               14-1080, gnl|Hg17|chr21 (35083379-35082350)
               

               
               14-1080, gnl|Mm7|chr16 (92657119-92655972)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               rec (0.17307)
               

               
               fat (0.147427)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	88-204, - strand, RNAz p=0.763598
	245-342, + strand, RNAz p=0.933541
	499-608, - strand, RNAz p=0.989704

	14-1080, gnl\|bosTau2\|chr1 (95939341-95940401)
	14-1080, gnl\|Hg17\|chr21 (35083379-35082350)
	14-1080, gnl\|Mm7\|chr16 (92657119-92655972)