Non-Coding RNA Search

Ss1.1-Pig3-SRG8012A10.5.5

Sequence:


               
               GCCCCGTGTTGAAAGAGACAAGGCTATCCCGCTGTCAGCCCGCCCCCTGGAGGTCCTGTG
GAATGTCAGCAGGACAGACCTGGAGATGTCGGGGCTGAAGACCCTGGAGCACGTGGCCGT
GACAGTCTCCATCACTCACCCGAGACGCGGCAGCTTGGAAGTGAAGCTCTTCTGCCCGAG
TGGCATGATGTCCCTCATCGGTGCCCCCCGCAGTATGGACTCGGACCCCAACGGCTTCAA
CGATTGGACCTTTTCCACCGTGCGGTGCTGGGGGGAAAGAGCAAGAGGGACCTACAGACT
CGTCATCCGGGATGTGGGAGATGAGAAGTCCCAGGCCGGCATCCTCCGGCAGTGGCAGCT
GACCCTATATGGCTCTGTGTGGAGTCCAGTAGACATCAGGGACAGACAAAGGCTACTAGA
AAGTGCCATGAGTGGGAAATACCTGCATGATGGCTTCACGCTGCCCTGCCCCCCCGGGCT
GAAAATCCCTGAGGAAGATGGTTATACCATCACGCCGAACACCCTCAAGACCCTGGTGCT
GATAGGCTGTTTCACTGTCTTCTGGACCATTTACTACATGCTGGAGGTATACCTGAGCCA
GAGGAATGTGGCCTCTCACCCAGTGTGTAGGAGTGGACCCTGCCACTGGCCCCAGCAAAG
CCGAAAAGCCAAGGAGGAGGGGACAGAACTAGAAGCAGTGCCCCTTTGCAGCAGCCAGGA
TCCAGGTGGAGTGGGGACGGAGAGTGAGGGCCCTTCCGCCCCCTCCAGGCTCCGCGCCCC
AGACCTGCTGGATCAAGGGGACTGGAGCCTGTCCCAGAACAGAGGTGCCCTGGACTGCCC
TCAGCGCCTCCCCCCAGACCTGCTACAGGGGAAGGGTGAGCAGATTTGCTGACCCAGGGC
CTGACAGCTTACATGGGAGAGGCTCCTCCTTCCTAGGACTTCCTTCCAACGCCCCAGGAG
CTCTGGGGAGAAGGCAGCAGAGGCTTACGGCGGGGACCAGAGGCCTAAAGAGTCCCCCCA
ACTAAAGACTATGCTCAGGGAGGCCCAGGGCCTTCCGAAGGTTAAGCCGCAGAGGAGTAG
TGCCTGAGAACAGTCTGGCAACAGCCCTGAAACCTTCCAACAACTGAACAGGAGCCTTTG
GTGAGGTCTTGGACCCGGGATTGGTGCCGCCACCGGGCAGTCCTCCATCCTCATTTCTCC
AGGGCAAGCCAGCAGTGTGGGTCACAGGGACCCTCACCCGTGCATGACCAGAAGAGCGTC
TCAGCCGAAACATCACTGGAGCCGCTTGCGAAGAGGCCTTAGGGATGGAGGCCGGGAAGA
GTCCCGGACATGCCTGTCCGTTCCGTGGCCTGGGGGCCAGAAACAGCAGCCCCTTCCTCT
CTCCCTCTCACCTTCCAGCCTAAGCCTTGGACCTCTGACATGTTGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCGTGTTGAAAGAGACAAGGCTATCCCGCTGTCAGCCCGCCCCCTGGAGGTCCTGTG
GAATGTCAGCAGGACAGACCTGGAGATGTCGGGGCTGAAGACCCTGGAGCACGTGGCCGT
GACAGTCTCCATCACTCACCCGAGACGCGGCAGCTTGGAAGTGAAGCTCTTCTGCCCGAG
TGGCATGATGTCCCTCATCGGTGCCCCCCGCAGTATGGACTCGGACCCCAACGGCTTCAA
CGATTGGACCTTTTCCACCGTGCGGTGCTGGGGGGAAAGAGCAAGAGGGACCTACAGACT
CGTCATCCGGGATGTGGGAGATGAGAAGTCCCAGGCCGGCATCCTCCGGCAGTGGCAGCT
GACCCTATATGGCTCTGTGTGGAGTCCAGTAGACATCAGGGACAGACAAAGGCTACTAGA
AAGTGCCATGAGTGGGAAATACCTGCATGATGGCTTCACGCTGCCCTGCCCCCCCGGGCT
GAAAATCCCTGAGGAAGATGGTTATACCATCACGCCGAACACCCTCAAGACCCTGGTGCT
GATAGGCTGTTTCACTGTCTTCTGGACCATTTACTACATGCTGGAGGTATACCTGAGCCA
GAGGAATGTGGCCTCTCACCCAGTGTGTAGGAGTGGACCCTGCCACTGGCCCCAGCAAAG
CCGAAAAGCCAAGGAGGAGGGGACAGAACTAGAAGCAGTGCCCCTTTGCAGCAGCCAGGA
TCCAGGTGGAGTGGGGACGGAGAGTGAGGGCCCTTCCGCCCCCTCCAGGCTCCGCGCCCC
AGACCTGCTGGATCAAGGGGACTGGAGCCTGTCCCAGAACAGAGGTGCCCTGGACTGCCC
TCAGCGCCTCCCCCCAGACCTGCTACAGGGGAAGGGTGAGCAGATTTGCTGACCCAGGGC
CTGACAGCTTACATGGGAGAGGCTCCTCCTTCCTAGGACTTCCTTCCAACGCCCCAGGAG
CTCTGGGGAGAAGGCAGCAGAGGCTTACGGCGGGGACCAGAGGCCTAAAGAGTCCCCCCA
ACTAAAGACTATGCTCAGGGAGGCCCAGGGCCTTCCGAAGGTTAAGCCGCAGAGGAGTAG
TGCCTGAGAACAGTCTGGCAACAGCCCTGAAACCTTCCAACAACTGAACAGGAGCCTTTG
GTGAGGTCTTGGACCCGGGATTGGTGCCGCCACCGGGCAGTCCTCCATCCTCATTTCTCC
AGGGCAAGCCAGCAGTGTGGGTCACAGGGACCCTCACCCGTGCATGACCAGAAGAGCGTC
TCAGCCGAAACATCACTGGAGCCGCTTGCGAAGAGGCCTTAGGGATGGAGGCCGGGAAGA
GTCCCGGACATGCCTGTCCGTTCCGTGGCCTGGGGGCCAGAAACAGCAGCCCCTTCCTCT
CTCCCTCTCACCTTCCAGCCTAAGCCTTGGACCTCTGACATGTTGGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5881959|gb|AAD55137.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5881959|gb|AAD55137.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               643-944, - strand, RNAz p=0.97524
               

               
               983-1141, + strand, RNAz p=0.866161
               

               
               1294-1412, - strand, RNAz p=0.931956

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               643-944, - strand, RNAz p=0.97524
               

               
               983-1141, + strand, RNAz p=0.866161
               

               
               1294-1412, - strand, RNAz p=0.931956

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004716, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004716, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               65-226, gnl|bosTau2|chr15 (9212700-9212539)
               

               
               65-226, gnl|canFam2|chr5 (19391554-19391694)
               

               
               65-226, gnl|danRer3|chr24 (9131094-9131210)
               

               
               65-226, gnl|echTel1|scaffold_225781 (1015-875)
               

               
               65-226, gnl|fr1|chrUn (188004109-188003984)
               

               
               65-226, gnl|galGal2|chr24 (4906867-4906727)
               

               
               65-226, gnl|hg17|chr11 (116511444-116511584)
               

               
               65-226, gnl|Hg17|chr11 (116584980-116584819)
               

               
               65-226, gnl|loxAfr1|scaffold_49964 (2232-2372)
               

               
               65-226, gnl|mm7|chr9 (45884022-45884162)
               

               
               65-226, gnl|Mm7|chr9 (45884033-45884194)
               

               
               65-226, gnl|monDom2|scaffold_2 (122055783-122055916)
               

               
               65-226, gnl|oryCun1|scaffold_139291 (3467-3607)
               

               
               65-226, gnl|panTro1|chr9 (118511508-118511648)
               

               
               65-226, gnl|rheMac2|chr14 (115608105-115607965)
               

               
               65-226, gnl|rn3|chr8 (48907094-48907234)
               

               
               65-226, gnl|tetNig1|chr16 (7974557-7974421)
               


               
               523-1427, gnl|bosTau2|chr15 (9210150-9209212)
               

               
               523-1427, gnl|Hg17|chr11 (116582289-116581472)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-226, gnl|bosTau2|chr15 (9212700-9212539)
               

               
               65-226, gnl|canFam2|chr5 (19391554-19391694)
               

               
               65-226, gnl|danRer3|chr24 (9131094-9131210)
               

               
               65-226, gnl|echTel1|scaffold_225781 (1015-875)
               

               
               65-226, gnl|fr1|chrUn (188004109-188003984)
               

               
               65-226, gnl|galGal2|chr24 (4906867-4906727)
               

               
               65-226, gnl|hg17|chr11 (116511444-116511584)
               

               
               65-226, gnl|Hg17|chr11 (116584980-116584819)
               

               
               65-226, gnl|loxAfr1|scaffold_49964 (2232-2372)
               

               
               65-226, gnl|mm7|chr9 (45884022-45884162)
               

               
               65-226, gnl|Mm7|chr9 (45884033-45884194)
               

               
               65-226, gnl|monDom2|scaffold_2 (122055783-122055916)
               

               
               65-226, gnl|oryCun1|scaffold_139291 (3467-3607)
               

               
               65-226, gnl|panTro1|chr9 (118511508-118511648)
               

               
               65-226, gnl|rheMac2|chr14 (115608105-115607965)
               

               
               65-226, gnl|rn3|chr8 (48907094-48907234)
               

               
               65-226, gnl|tetNig1|chr16 (7974557-7974421)
               


               
               523-1427, gnl|bosTau2|chr15 (9210150-9209212)
               

               
               523-1427, gnl|Hg17|chr11 (116582289-116581472)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nco (0.161734)
               

               
               cov (0.132153)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               cov (0.132153)
               

               
               cty (0.10408)

	643-944, - strand, RNAz p=0.97524
	983-1141, + strand, RNAz p=0.866161
	1294-1412, - strand, RNAz p=0.931956

	65-226, gnl\|bosTau2\|chr15 (9212700-9212539)
	65-226, gnl\|canFam2\|chr5 (19391554-19391694)
	65-226, gnl\|danRer3\|chr24 (9131094-9131210)
	65-226, gnl\|echTel1\|scaffold_225781 (1015-875)
	65-226, gnl\|fr1\|chrUn (188004109-188003984)
	65-226, gnl\|galGal2\|chr24 (4906867-4906727)
	65-226, gnl\|hg17\|chr11 (116511444-116511584)
	65-226, gnl\|Hg17\|chr11 (116584980-116584819)
	65-226, gnl\|loxAfr1\|scaffold_49964 (2232-2372)
	65-226, gnl\|mm7\|chr9 (45884022-45884162)
	65-226, gnl\|Mm7\|chr9 (45884033-45884194)
	65-226, gnl\|monDom2\|scaffold_2 (122055783-122055916)
	65-226, gnl\|oryCun1\|scaffold_139291 (3467-3607)
	65-226, gnl\|panTro1\|chr9 (118511508-118511648)
	65-226, gnl\|rheMac2\|chr14 (115608105-115607965)
	65-226, gnl\|rn3\|chr8 (48907094-48907234)
	65-226, gnl\|tetNig1\|chr16 (7974557-7974421)

	523-1427, gnl\|bosTau2\|chr15 (9210150-9209212)
	523-1427, gnl\|Hg17\|chr11 (116582289-116581472)