Non-Coding RNA Search

Ss1.1-Pig3-SRG8012A12.3

Sequence:


               
               TATCAACTGTCGAAGTGGGCAAGGAGCTGTTGCCTTGCAAGGATTTGGGCGAAATGAAAG
TCTTTTGTCCAGATCTGGAATCAAGGGTTTTGGAATCTATCACTGAGCTCCTGGCCAGCA
TTTGAAGCCTGGCTTCCCACTCTGACATTTCCTGGCATCCTATTCCTATCCTATAGCATT
TGCTATGAATGATAGGGGCCCATATGGAAGCCCATGGCTAAAGAACCCACCCAGGGATAG
TCCTGGTCACTAATCTATGGCCTTCCCAATTAGCACATTTCCTCCGTCATCAATAACCAA
GAGGCTGTAATCAAATACTAACTCTGTCACTTAAAAGATGTTCTGAGGTTGCAAGCTGTG
CTCACTTGCTTTCTTGCCTTGGTGAGAGGCATGCTCTTGGACCACGGCTGACTACAGCAA
GACAGAATTAATTCCTTTCCCCCTAGGCACCCCCCCCCCAACCTGGCAGCTCTTAAAACT
AAGGAAAATATGAAATATACATATATATATATATATACATATATCTATTTATGCACATAT
TGGGGCCAATTTGATTTGCTAGTATTAGACAATAAACCATACAAGGAAATTTATGATCTC
AGTGTCTTTATTTAGTATAAAAGTGACCTTAGAAGAAGAGTTAAGGTTAGATAAACAGAG
GGTATCTCTGTCAGGGGACCAAACAACCATAGCAGCCCCTTAGCATCTTTCTAGCAGATG
AGCCTCTCCCCAGGGAGGGGCCATCCTAATTGACAGATGAGAGCTTGCTTCCCTCTCAGC
AGCATTCTTTTTAGATGTAGGTACTGAAGCACCCAGTGAGCTCGCATTTGTATCTTGCAA
GTTTGTATAAACCCATTACAGGAAATAAATGGTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCAACTGTCGAAGTGGGCAAGGAGCTGTTGCCTTGCAAGGATTTGGGCGAAATGAAAG
TCTTTTGTCCAGATCTGGAATCAAGGGTTTTGGAATCTATCACTGAGCTCCTGGCCAGCA
TTTGAAGCCTGGCTTCCCACTCTGACATTTCCTGGCATCCTATTCCTATCCTATAGCATT
TGCTATGAATGATAGGGGCCCATATGGAAGCCCATGGCTAAAGAACCCACCCAGGGATAG
TCCTGGTCACTAATCTATGGCCTTCCCAATTAGCACATTTCCTCCGTCATCAATAACCAA
GAGGCTGTAATCAAATACTAACTCTGTCACTTAAAAGATGTTCTGAGGTTGCAAGCTGTG
CTCACTTGCTTTCTTGCCTTGGTGAGAGGCATGCTCTTGGACCACGGCTGACTACAGCAA
GACAGAATTAATTCCTTTCCCCCTAGGCACCCCCCCCCCAACCTGGCAGCTCTTAAAACT
AAGGAAAATATGAAATATACATATATATATATATATACATATATCTATTTATGCACATAT
TGGGGCCAATTTGATTTGCTAGTATTAGACAATAAACCATACAAGGAAATTTATGATCTC
AGTGTCTTTATTTAGTATAAAAGTGACCTTAGAAGAAGAGTTAAGGTTAGATAAACAGAG
GGTATCTCTGTCAGGGGACCAAACAACCATAGCAGCCCCTTAGCATCTTTCTAGCAGATG
AGCCTCTCCCCAGGGAGGGGCCATCCTAATTGACAGATGAGAGCTTGCTTCCCTCTCAGC
AGCATTCTTTTTAGATGTAGGTACTGAAGCACCCAGTGAGCTCGCATTTGTATCTTGCAA
GTTTGTATAAACCCATTACAGGAAATAAATGGTTTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               6-316, + strand, RNAz p=0.999566
               

               
               634-828, - strand, RNAz p=0.853047

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-316, + strand, RNAz p=0.999566
               

               
               634-828, - strand, RNAz p=0.853047

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC010522, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC010522, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-876, gnl|bosTau2|chr16 (2153878-2154730)
               

               
               6-876, gnl|Hg17|chr1 (200920542-200919640)
               

               
               6-876, gnl|Mm7|chr1 (133203497-133204349)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-876, gnl|bosTau2|chr16 (2153878-2154730)
               

               
               6-876, gnl|Hg17|chr1 (200920542-200919640)
               

               
               6-876, gnl|Mm7|chr1 (133203497-133204349)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbe (0.239234)
               

               
               nje (0.16592)
               

               
               lin (0.145603)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               nje (0.16592)
               

               
               lin (0.145603)

	6-316, + strand, RNAz p=0.999566
	634-828, - strand, RNAz p=0.853047

	6-876, gnl\|bosTau2\|chr16 (2153878-2154730)
	6-876, gnl\|Hg17\|chr1 (200920542-200919640)
	6-876, gnl\|Mm7\|chr1 (133203497-133204349)