Non-Coding RNA Search

Ss1.1-Pig3-SRG8012A17.3

Sequence:


               
               GGGGGAGGGGGGAGGCAGTCGTGATGACCTCAGAAATACTCACTTTTCATTAATGCTAAA
TACCAGTTATAAAAGGGTAGGGTTCAGCGTTTTCTTCATCTTCATCTATTAAGCTCTCTA
ACTCCCTGCCCTCAAACCACTGAAAAGAAAATAACCTTCAGAGATTCTTAGAAGAGTTGC
TCATTCACACCCACGCCCTTGCCCAAGGCCTGCCCACGCAGAGCTGAAGTCAGCTTCTGT
TCGGGGTGGGGAGGGGAGTAGATCCAGGAGAGGTCCCGGTAGATGACCCAGCGCACCGGG
ACCGGCCCCCCAGAGTCTGGGTGTTCATCTCCAAGAGCCTCCGTTTTCTGACTTGCCCCA
GGCTGGGGTGTAGTGGCAGGTAGGCAGGTCACATTTGAAGAAGGGACCCAGGCTGGGTCT
GGGTTGGTGCTGTCCCTCAGTTTGGGGGCAGGGGGCATGAGAGAGGTGGTACATTTTCTC
TTTTGAGGGAGCCCTGTCATAGGTAAGGTCAGTCAGGAGCACTTCAGGAGGGAGTGGGGT
CCCCGGGCAAGGGGTACTGCTGCCAAGACCCCACACTCCCCGCTCCCAGCATCAGTCCCT
TTTCCTAGGATGAATTTGGAAGGGGAATGGGATGCAGACGCAGAGATCGCTCTGTGTAGG
GGAGAGGAAGGATGTGGTTTGCAGGGCGGAAGTGGAGTTTGAAAAGCAGAGCGGAGCTTA
GTATTTATTTCATCACCCTCAGCGTGGAGGTGTGAGTGTGGCGTGCATGCAGAGCCAGTG
TCTGGCCCTGAGGTCACAACTAGTGCAGGAATGTCTGAGCTGGAAGGCACCTGCCTTTAG
GGGTTGTTTGAGCCAGCTCCTCGCTTCACAGGTGATAGCTCCAAGCCTAGGAGGGGCAGG
GGCTCAGGGGCAGAGCCAGGACCCTCCCTCAGGACCCTGGCCTCCTGGTCCTTGGCTCTC
CTGCCCCGCTGCACTGCCTCCGTGTGGCTGTCCGTCTGTCCCTGTGTGTGTGAGTGCCGT
GTGAGTGTAGGGCTGTGCCCGAGGTGGGGGGCATCTGTGAAGCTCTGACTGTCTTAGCTC
AGAGCTGATGGATCCTCTCCAGAGACAATGACACTTTAAAGGTTGCCTTTTCTTCTCTAA
GTTTTCTCTATGTGTATGTGAGTTTTACCCCTCAGACTCCAAGGTCTACTGCTGCCTCCA
GGCGCCCTTACCTTGAGGCCGATGAGAGCACCCCTGCCTACTCGGGTCCTGAGTTCTAGG
GAAGTCCTCCTAGGAAGGGCCTTGGCAATGAGGGGAGCCAGGGAAAGAGAAAGAGCCGGC
TCTGAGAAAGGGTGACTCTCTTTCTTCCCTTTCCCCAACTGGAAATGCAGACGAGTTTTC
AAAGGCACAGGCTCCCCCTGCCAGCTTCCAGCATCTTCCTTGGTGTGTGGTGGCCCAGAG
TTAGGGGTAGGCAGCTTGCTCCCAGTTCTCCTTTATCCCAACTTATTTCCCTGGGGACAG
GTGCCTGGAGGGATTCGGGTCACTTCATGTCTGGGAATTTGCAGAAAAGTGGGGCACCTG
GTTCCCTCCAGTCACATCAATGCAGATTAAACGTGTCTGGCTCCCAACCACTTGGACTTG
ATCTACTGAAAAGCTGGGGCCCGAGGGGTGCCTTCACTGCCCTCTGTTCACTTCCTCCAG
CCCAATCTGGGACTTAGGTGGTGGGACTGGAGATCCAAACCCTGGCTCCCACCGTGTCCC
CCTCTTCCATCCCAGCCTGTCTCAATGTAGCAGACCCTTCCTAGGGGAGCAGGGAAGGGA
AGCCACAGTTTGCAAACCCAGGGGCTCCTTTTTCATTCTTTTCTAAAAGCCTCCTTTATA
TCCTCAACCCAAAAGGCAATGCCCCTCCCCTGCCACCTCCAAGCCTGGAATTGTGCATAA
CCCGGATCTTGTATCTTTGTATAACGGATGTTATTTGTACGAAGGGCAGTTCGTAAACAG
CACTTGTTCTTTTAATAAAAGAATGTTTTACAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGAGGGGGGAGGCAGTCGTGATGACCTCAGAAATACTCACTTTTCATTAATGCTAAA
TACCAGTTATAAAAGGGTAGGGTTCAGCGTTTTCTTCATCTTCATCTATTAAGCTCTCTA
ACTCCCTGCCCTCAAACCACTGAAAAGAAAATAACCTTCAGAGATTCTTAGAAGAGTTGC
TCATTCACACCCACGCCCTTGCCCAAGGCCTGCCCACGCAGAGCTGAAGTCAGCTTCTGT
TCGGGGTGGGGAGGGGAGTAGATCCAGGAGAGGTCCCGGTAGATGACCCAGCGCACCGGG
ACCGGCCCCCCAGAGTCTGGGTGTTCATCTCCAAGAGCCTCCGTTTTCTGACTTGCCCCA
GGCTGGGGTGTAGTGGCAGGTAGGCAGGTCACATTTGAAGAAGGGACCCAGGCTGGGTCT
GGGTTGGTGCTGTCCCTCAGTTTGGGGGCAGGGGGCATGAGAGAGGTGGTACATTTTCTC
TTTTGAGGGAGCCCTGTCATAGGTAAGGTCAGTCAGGAGCACTTCAGGAGGGAGTGGGGT
CCCCGGGCAAGGGGTACTGCTGCCAAGACCCCACACTCCCCGCTCCCAGCATCAGTCCCT
TTTCCTAGGATGAATTTGGAAGGGGAATGGGATGCAGACGCAGAGATCGCTCTGTGTAGG
GGAGAGGAAGGATGTGGTTTGCAGGGCGGAAGTGGAGTTTGAAAAGCAGAGCGGAGCTTA
GTATTTATTTCATCACCCTCAGCGTGGAGGTGTGAGTGTGGCGTGCATGCAGAGCCAGTG
TCTGGCCCTGAGGTCACAACTAGTGCAGGAATGTCTGAGCTGGAAGGCACCTGCCTTTAG
GGGTTGTTTGAGCCAGCTCCTCGCTTCACAGGTGATAGCTCCAAGCCTAGGAGGGGCAGG
GGCTCAGGGGCAGAGCCAGGACCCTCCCTCAGGACCCTGGCCTCCTGGTCCTTGGCTCTC
CTGCCCCGCTGCACTGCCTCCGTGTGGCTGTCCGTCTGTCCCTGTGTGTGTGAGTGCCGT
GTGAGTGTAGGGCTGTGCCCGAGGTGGGGGGCATCTGTGAAGCTCTGACTGTCTTAGCTC
AGAGCTGATGGATCCTCTCCAGAGACAATGACACTTTAAAGGTTGCCTTTTCTTCTCTAA
GTTTTCTCTATGTGTATGTGAGTTTTACCCCTCAGACTCCAAGGTCTACTGCTGCCTCCA
GGCGCCCTTACCTTGAGGCCGATGAGAGCACCCCTGCCTACTCGGGTCCTGAGTTCTAGG
GAAGTCCTCCTAGGAAGGGCCTTGGCAATGAGGGGAGCCAGGGAAAGAGAAAGAGCCGGC
TCTGAGAAAGGGTGACTCTCTTTCTTCCCTTTCCCCAACTGGAAATGCAGACGAGTTTTC
AAAGGCACAGGCTCCCCCTGCCAGCTTCCAGCATCTTCCTTGGTGTGTGGTGGCCCAGAG
TTAGGGGTAGGCAGCTTGCTCCCAGTTCTCCTTTATCCCAACTTATTTCCCTGGGGACAG
GTGCCTGGAGGGATTCGGGTCACTTCATGTCTGGGAATTTGCAGAAAAGTGGGGCACCTG
GTTCCCTCCAGTCACATCAATGCAGATTAAACGTGTCTGGCTCCCAACCACTTGGACTTG
ATCTACTGAAAAGCTGGGGCCCGAGGGGTGCCTTCACTGCCCTCTGTTCACTTCCTCCAG
CCCAATCTGGGACTTAGGTGGTGGGACTGGAGATCCAAACCCTGGCTCCCACCGTGTCCC
CCTCTTCCATCCCAGCCTGTCTCAATGTAGCAGACCCTTCCTAGGGGAGCAGGGAAGGGA
AGCCACAGTTTGCAAACCCAGGGGCTCCTTTTTCATTCTTTTCTAAAAGCCTCCTTTATA
TCCTCAACCCAAAAGGCAATGCCCCTCCCCTGCCACCTCCAAGCCTGGAATTGTGCATAA
CCCGGATCTTGTATCTTTGTATAACGGATGTTATTTGTACGAAGGGCAGTTCGTAAACAG
CACTTGTTCTTTTAATAAAAGAATGTTTTACAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1166-1282, - strand, RNAz p=0.711627
               

               
               1622-1900, - strand, RNAz p=0.887966

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1166-1282, - strand, RNAz p=0.711627
               

               
               1622-1900, - strand, RNAz p=0.887966

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-263, gnl|bosTau2|chr19 (31563952-31564218)
               

               
               1-263, gnl|Hg17|chr17 (34137141-34137706)
               


               
               268-2025, gnl|bosTau2|chr19 (31564247-31565975)
               

               
               268-2025, gnl|Hg17|chr17 (34137735-34139571)
               

               
               268-2025, gnl|Mm7|chr11 (97792837-97794495)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-263, gnl|bosTau2|chr19 (31563952-31564218)
               

               
               1-263, gnl|Hg17|chr17 (34137141-34137706)
               


               
               268-2025, gnl|bosTau2|chr19 (31564247-31565975)
               

               
               268-2025, gnl|Hg17|chr17 (34137735-34139571)
               

               
               268-2025, gnl|Mm7|chr11 (97792837-97794495)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               med (0.465008)
               

               
               ill (0.351185)
               

               
               nco (0.323468)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.465008)
               

               
               ill (0.351185)
               

               
               nco (0.323468)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	1166-1282, - strand, RNAz p=0.711627
	1622-1900, - strand, RNAz p=0.887966

	1-263, gnl\|bosTau2\|chr19 (31563952-31564218)
	1-263, gnl\|Hg17\|chr17 (34137141-34137706)

	268-2025, gnl\|bosTau2\|chr19 (31564247-31565975)
	268-2025, gnl\|Hg17\|chr17 (34137735-34139571)
	268-2025, gnl\|Mm7\|chr11 (97792837-97794495)

	med (0.465008)
	ill (0.351185)
	nco (0.323468)
	fty (0.17584)
	fbs (0.175346)
	duo (0.172801)
	mcp (0.170648)
	cag (0.151194)
	pla (0.133672)
	pgl (0.118483)
	ecc (0.115035)
	cty (0.10408)