Non-Coding RNA Search

Ss1.1-Pig3-SRG8012B01.3

Sequence:


               
               CAAGAAACCCATTTTAAACATCATCAACTTGAGTCTTTCACTTAAACTCTTGAGATAAAG
CCTCTAGGAAGTTTTAAGCAAGGAAACAGAAACCTTTGTTCCTTTAAAAAGACTGAAAGT
CTGACCTTCAGGAAATTGATGCACTTTTGCTTTTGTGTTAAATGTAGGTGTGCTCAAAGA
TATAGCACCATCATGATTTATGTAAATATGTATGTCATTCCAATGTAAAATTTTTCCTTC
TACCCAAGGGTCCCGGCCATTGATTATGGGTCAATAATGTGTAACGTTACGTTACTAAAA
AAAGCCACTTCTGACCTTCTACCATATGCTTTTCAAAGATGGACTGTTGAACTATAAAAA
AAAACCGATTGTTCATGTGTGAATTGGTCCTCATCTTATCCTAACATGGAAACATCATTT
TTACCTGGAGTCGATGTTGTAAGTATGGTAGGATACAGGTGGCAAATGTGAAAATTCAGA
AAATTACAAACCATGAGAATTGTGGTCTTGTCTCTTTGAACTGTTCTTTTGGGTCTCTTG
TTGGGAGTCTGTTTCATGTGCCATCACTAAGTAGACTTAATATGCTGTGGAATCTTGAAC
TTCCAACACCACATGGCTTGATACAGTGACTTTGGGGTCCTTGGATGAAATGAGATATAT
GCAAGTACAATATGTTGCTATTACCTTTGCAGGAGTATAAGTAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGAAACCCATTTTAAACATCATCAACTTGAGTCTTTCACTTAAACTCTTGAGATAAAG
CCTCTAGGAAGTTTTAAGCAAGGAAACAGAAACCTTTGTTCCTTTAAAAAGACTGAAAGT
CTGACCTTCAGGAAATTGATGCACTTTTGCTTTTGTGTTAAATGTAGGTGTGCTCAAAGA
TATAGCACCATCATGATTTATGTAAATATGTATGTCATTCCAATGTAAAATTTTTCCTTC
TACCCAAGGGTCCCGGCCATTGATTATGGGTCAATAATGTGTAACGTTACGTTACTAAAA
AAAGCCACTTCTGACCTTCTACCATATGCTTTTCAAAGATGGACTGTTGAACTATAAAAA
AAAACCGATTGTTCATGTGTGAATTGGTCCTCATCTTATCCTAACATGGAAACATCATTT
TTACCTGGAGTCGATGTTGTAAGTATGGTAGGATACAGGTGGCAAATGTGAAAATTCAGA
AAATTACAAACCATGAGAATTGTGGTCTTGTCTCTTTGAACTGTTCTTTTGGGTCTCTTG
TTGGGAGTCTGTTTCATGTGCCATCACTAAGTAGACTTAATATGCTGTGGAATCTTGAAC
TTCCAACACCACATGGCTTGATACAGTGACTTTGGGGTCCTTGGATGAAATGAGATATAT
GCAAGTACAATATGTTGCTATTACCTTTGCAGGAGTATAAGTAATAAA

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               435-708, gnl|bosTau2|chr11 (39081344-39081082)
               

               
               435-708, gnl|Hg17|chr18 (19434490-19434215)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               435-708, gnl|bosTau2|chr11 (39081344-39081082)
               

               
               435-708, gnl|Hg17|chr18 (19434490-19434215)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	435-708, gnl\|bosTau2\|chr11 (39081344-39081082)
	435-708, gnl\|Hg17\|chr18 (19434490-19434215)