Non-Coding RNA Search

Ss1.1-Pig3-SRG8012B08.3

Sequence:


               
               TAGCCTCTCTGTTTCTTGGGCTCACATAGAGATAGCCCTTTAGCTCCAAATCCTTGTTAG
ATTGGAAAACAGAATGAACAAAACTGGATGCTAAAGCCGATGCTAAGCAGGACCCAAGGA
CTAGGTCACAAACTCCATTTCCTTTTGGGCCCACTCATCCTTGAGTTGAGGTTTCAAGTG
TGTGAACTGCTGTGACTGTATTCACACGCTCATGTTAGATTGGAGTTGAACCTGGCAACC
AACACTTATTTCTGAACTTTGAAGAAAAATACCAGTATCTTACTGACCCATTATATTTAG
TAAGTTTTAGAATACATGTACATCAATGTTTTCAACTATTTGGTAGCTATTTCACTGGTT
CAAAAGGGAAAAGTAGCGGATGTCAGTTTTCTTGAAAATAGGTGTAATCACCAGAGTGAC
CTAAGAATAGAAATTCAATCATGCTGTTTTTGGTTCCCTAACAAAAAGTCATCGAAACAT
AGGTATAGGAGCCCCAGGTGGTGCAGCAGGTTAAGGATCCGGTATTGTCACTGCTGTGGC
ATGGATTCGATCGCTGGCCCTGGAACTTTGTATGCTAAAGGCGACACCAAAAACAAAACA
AAAAAACAAATGTAAGTTATATAATATGCGTGCATTATAGCAAATAGGAAATTTTATGAT
AGGAAACCAGAGAAGGGTGAGATCCAACTCACTCTCTAGCAGGAACGATACTACTTAGAT
TGGAGTTCCTGGGGTTCCTTTAATAAAGAAAGATGTTATTCTCTGCTGTGTCTTTGGAAT
TGAAATTGGAGAACACAGGCCAGTCAACTCGGGAATGGCTGCTGGTCATACGTATGCAGT
TTTATATGAGAAATTTGGAACCCAGATTATTCTGATGAAAGGTACATAGGAGAGCCACTG
AAAGACCACGGCTTCTAAGGAGGTAGGAGCACCATGTAAATGCCCACAGCCACCCCCCAA
GTTCTAATCCTGCCTTCTGGAGTAAACACGAAGACTTTAAATGGAATCATGCAATGTAAA
TTCTGTTTTTTCCAGTGACTTTGTCAGCTGCTACTTGTTTGTTTGCTTGTTTGTGTGTTT
TAACCACCAGAACACTTGCAAACTTGTGACGTTCACTTAAGGAAGGAATTCGAAATGCTT
GAAAATAAAGAGTAGTATCTGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGCCTCTCTGTTTCTTGGGCTCACATAGAGATAGCCCTTTAGCTCCAAATCCTTGTTAG
ATTGGAAAACAGAATGAACAAAACTGGATGCTAAAGCCGATGCTAAGCAGGACCCAAGGA
CTAGGTCACAAACTCCATTTCCTTTTGGGCCCACTCATCCTTGAGTTGAGGTTTCAAGTG
TGTGAACTGCTGTGACTGTATTCACACGCTCATGTTAGATTGGAGTTGAACCTGGCAACC
AACACTTATTTCTGAACTTTGAAGAAAAATACCAGTATCTTACTGACCCATTATATTTAG
TAAGTTTTAGAATACATGTACATCAATGTTTTCAACTATTTGGTAGCTATTTCACTGGTT
CAAAAGGGAAAAGTAGCGGATGTCAGTTTTCTTGAAAATAGGTGTAATCACCAGAGTGAC
CTAAGAATAGAAATTCAATCATGCTGTTTTTGGTTCCCTAACAAAAAGTCATCGAAACAT
AGGTATAGGAGCCCCAGGTGGTGCAGCAGGTTAAGGATCCGGTATTGTCACTGCTGTGGC
ATGGATTCGATCGCTGGCCCTGGAACTTTGTATGCTAAAGGCGACACCAAAAACAAAACA
AAAAAACAAATGTAAGTTATATAATATGCGTGCATTATAGCAAATAGGAAATTTTATGAT
AGGAAACCAGAGAAGGGTGAGATCCAACTCACTCTCTAGCAGGAACGATACTACTTAGAT
TGGAGTTCCTGGGGTTCCTTTAATAAAGAAAGATGTTATTCTCTGCTGTGTCTTTGGAAT
TGAAATTGGAGAACACAGGCCAGTCAACTCGGGAATGGCTGCTGGTCATACGTATGCAGT
TTTATATGAGAAATTTGGAACCCAGATTATTCTGATGAAAGGTACATAGGAGAGCCACTG
AAAGACCACGGCTTCTAAGGAGGTAGGAGCACCATGTAAATGCCCACAGCCACCCCCCAA
GTTCTAATCCTGCCTTCTGGAGTAAACACGAAGACTTTAAATGGAATCATGCAATGTAAA
TTCTGTTTTTTCCAGTGACTTTGTCAGCTGCTACTTGTTTGTTTGCTTGTTTGTGTGTTT
TAACCACCAGAACACTTGCAAACTTGTGACGTTCACTTAAGGAAGGAATTCGAAATGCTT
GAAAATAAAGAGTAGTATCTGGTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               250-369, + strand, RNAz p=0.583505
               

               
               659-776, - strand, RNAz p=0.998231

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               250-369, + strand, RNAz p=0.583505
               

               
               659-776, - strand, RNAz p=0.998231

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               19-484, gnl|bosTau2|chr11 (48879437-48879895)
               

               
               19-484, gnl|Hg17|chr2 (69599558-69599137)
               


               
               659-1164, gnl|bosTau2|chr11 (48879922-48880412)
               

               
               659-1164, gnl|canFam2|chr10 (71328939-71329338)
               

               
               659-1164, gnl|dasNov1|scaffold_196314 (155-561)
               

               
               659-1164, gnl|hg17|chr2 (69598567-69598957)
               

               
               659-1164, gnl|Hg17|chr2 (69599108-69598581)
               

               
               659-1164, gnl|loxAfr1|scaffold_80508 (6673-7074)
               

               
               659-1164, gnl|mm7|chr6 (87076642-87076316)
               

               
               659-1164, gnl|Mm7|chr6 (87076162-87076627)
               

               
               659-1164, gnl|oryCun1|scaffold_198933 (21716-22072)
               

               
               659-1164, gnl|panTro1|chr12 (71835926-71836316)
               

               
               659-1164, gnl|rheMac2|chr13 (69707378-69707770)
               

               
               659-1164, gnl|rn3|chr4 (121401923-121401592)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-484, gnl|bosTau2|chr11 (48879437-48879895)
               

               
               19-484, gnl|Hg17|chr2 (69599558-69599137)
               


               
               659-1164, gnl|bosTau2|chr11 (48879922-48880412)
               

               
               659-1164, gnl|canFam2|chr10 (71328939-71329338)
               

               
               659-1164, gnl|dasNov1|scaffold_196314 (155-561)
               

               
               659-1164, gnl|hg17|chr2 (69598567-69598957)
               

               
               659-1164, gnl|Hg17|chr2 (69599108-69598581)
               

               
               659-1164, gnl|loxAfr1|scaffold_80508 (6673-7074)
               

               
               659-1164, gnl|mm7|chr6 (87076642-87076316)
               

               
               659-1164, gnl|Mm7|chr6 (87076162-87076627)
               

               
               659-1164, gnl|oryCun1|scaffold_198933 (21716-22072)
               

               
               659-1164, gnl|panTro1|chr12 (71835926-71836316)
               

               
               659-1164, gnl|rheMac2|chr13 (69707378-69707770)
               

               
               659-1164, gnl|rn3|chr4 (121401923-121401592)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	250-369, + strand, RNAz p=0.583505
	659-776, - strand, RNAz p=0.998231

	19-484, gnl\|bosTau2\|chr11 (48879437-48879895)
	19-484, gnl\|Hg17\|chr2 (69599558-69599137)

	659-1164, gnl\|bosTau2\|chr11 (48879922-48880412)
	659-1164, gnl\|canFam2\|chr10 (71328939-71329338)
	659-1164, gnl\|dasNov1\|scaffold_196314 (155-561)
	659-1164, gnl\|hg17\|chr2 (69598567-69598957)
	659-1164, gnl\|Hg17\|chr2 (69599108-69598581)
	659-1164, gnl\|loxAfr1\|scaffold_80508 (6673-7074)
	659-1164, gnl\|mm7\|chr6 (87076642-87076316)
	659-1164, gnl\|Mm7\|chr6 (87076162-87076627)
	659-1164, gnl\|oryCun1\|scaffold_198933 (21716-22072)
	659-1164, gnl\|panTro1\|chr12 (71835926-71836316)
	659-1164, gnl\|rheMac2\|chr13 (69707378-69707770)
	659-1164, gnl\|rn3\|chr4 (121401923-121401592)