Ss1.1-Pig3-SRG8012B16.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCGACGATCAGCCGAGGTGGCGGAAAGGAGCGGGGAACGTTTTTCTCTTGGAGGAGGT CTCCCGGGGGGAAAACGGACCGGAAGTGGCGTGAGCGAGTTCCGGTTGGCCGCAGCCCAG CGGCGGGTGTGAGAGTCAGTCGCGAGCAGCTTCCAGGATCCCGAGATCCGGAGAAGCCGG AGTCAGAGCGGCTAGCTCCTGAAGAGTTATTGATCTATGAAATGGCAGAGAATGGAAAAA ATTGTGACCAGAGACGTGTAGCAATGAACAAGGAACAATATAACGGAAGCTTCACAGACC CCTCTTCGGTGAATGAAAAGAAAAGGAGGGATCGAGAAGAAAGGCAGAATATTGTCCTGT GGAGACAGCCACTCATTACCTTGCAGTATTTTTCTCTGGAAACCTTAGTAATCTTGAAGG AATGGACCTCAAAATTATGGCATCGTCAAAGCGTTGTGGTGTCTTTTTTACTGCTGCTTG CTGTGCTTATAGCTACGTATTATGTCGAAGGAGCACATCAACAGTATGTGCAACGTATAG AGAAACAGTTTCTTTTGTATGCCTACTGGATAGGCTTAGGAATTTTGTCTTCTGTTGGGC TTGGAACAGGGCTGCACACCTTTCTGCTTTATCTGGGTCCACATATAGCTTCAGTTACAT TAGCTGCTTATGAATGCAATTCAGTTAATTTCCCTGAACCACCCTATCCTGATCAGATTA TTTGTCCAGATGAAGAAGGCACTGAAGGAGCCATTTCTTTATGGAGCATCATCTCAAAAG TTAGAATTGAGGCCTGCATGTGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATT TCATGGCCAGGGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAATATCAGGAAT TTGAAGAGATGTTGGAACATGCACAGGCTGCACAAGACTTCGCCTCCCGAGCTAAACTGG CAGTTCAAAACCTAGTACAGAAGGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCAATTC CAAATCCTCTGTTTGATCTAGCTGGAATAACATGTGTTTTTTTTTTTTAACTCTTACTCT CTAATCCCTGCTTTTTGACTTGAGGCGGTAAGTGGATAGATTTTTCTTTAACATTTTTCG TGCTTTTCTCCCCATTCAGCAAACACATAGTGGAGCAGATGGTGGCTTTCATTGGTGCTG TCCCGGGCATAGGTCCGTCTCTGCAGAAGCCATTCCAGGAATACCTGGAGGCCCAGCGAC AGAAGCTTCACCACAAAAGCGAGATGGGCACTTTGCAGGGAGAAAACTGGTTGTCTTGGC TGTTTGAGAAGTTGGTCGTTGTAATGGTGTGTTACTTCATCCTGTCCATCATTAACTCCA TGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAAT AAGCAGAAAAAGTTTTTTTAACTGCAAAAATTTCAGTGGACGGGTTCTGCCGTAAATTGG GAGGACTCCAAACCAGGAAGGAAAATCCCCTTTTCCAACCTGAATCAAATTTTTTTTTTT TCCCCTGAAAGCAGTTTAAAACGTCCATGTTTTGCACTGACATACTTTTCCTTTGTGTAT TAAGGTAAGGTATCCACCCTCACTTCAATCCACGTTGTATTTTATCAGGGTGGAATTGAT GTTCAGCAGCAAACCTAAGTGAAACTGGCCTCTATTTGTTACTTACAAAGGCCCACATGG TACAATGAAAGAATTCCGGACACCCAAAAAAAAAAAAAAAAAATAGTTTCTAAGTATGTT AAATATGTCAAGCTTTTTAGGCTTGTCACAAATGACTTCTTTGTTTTTCTAAGTCATCAA AAGTGTATATAAATTATACTAGATTGGATAACAGTCTTGCATGTCTATCATGGTAAAATT TAACATGCCATCCTGCCCAGCCCTTCCTCTCCCACCTTCAAAAACAAAGGCCATTTTATG ATGCATTGCACACCCTCTCGGGAAACTGATCTTTACATTTTGAGACAGTATAAGGAAAAT CTTGTTGGTGTCTCACGAATGAGCTGACACCATTTTTTATCCTGTATATTTAGAATGAAG TCATGAAAAAACTTTATAAAGACATCTCTGATCATTCCAAAGTTGTGTCCGTTTTCTTTA GCGTTTTGATTTTTTACTTCTAGTTTCTACCAACCTAACGCACTTTAGCCAAATCCACCT ACAGCCACAGTCTTTTCAACCTTCATTTATTTGCTTGAACGAGCTGAGCTACCGCCAAGG CATTTTTTGTTGGGCTGGAATTGGGCAGCTAGCTCCCCACTGCTGAAATGGCGCCTTAGG AACTGGTGTATTGAGGGGATTTCTTGGTTTGCGAAAACAGAGATGAGATAATAGTGTACA AATCAAAGGACACAGAGAGAAAAATAACTTAAAAAAAAAGGCTTTCTCATATCAATTTTT AGCTCAGTGTGTACTCTGGTTTTAACAGAAATTTACTTTTACGTGTGACTAATTTTCTCG TTTAATAAGTGTTTTGTTCTTATGTGATTTTTCCTTTGGGATGTTTCTGGTTGAATTTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCGACGATCAGCCGAGGTGGCGGAAAGGAGCGGGGAACGTTTTTCTCTTGGAGGAGGT CTCCCGGGGGGAAAACGGACCGGAAGTGGCGTGAGCGAGTTCCGGTTGGCCGCAGCCCAG CGGCGGGTGTGAGAGTCAGTCGCGAGCAGCTTCCAGGATCCCGAGATCCGGAGAAGCCGG AGTCAGAGCGGCTAGCTCCTGAAGAGTTATTGATCTATGAAATGGCAGAGAATGGAAAAA ATTGTGACCAGAGACGTGTAGCAATGAACAAGGAACAATATAACGGAAGCTTCACAGACC CCTCTTCGGTGAATGAAAAGAAAAGGAGGGATCGAGAAGAAAGGCAGAATATTGTCCTGT GGAGACAGCCACTCATTACCTTGCAGTATTTTTCTCTGGAAACCTTAGTAATCTTGAAGG AATGGACCTCAAAATTATGGCATCGTCAAAGCGTTGTGGTGTCTTTTTTACTGCTGCTTG CTGTGCTTATAGCTACGTATTATGTCGAAGGAGCACATCAACAGTATGTGCAACGTATAG AGAAACAGTTTCTTTTGTATGCCTACTGGATAGGCTTAGGAATTTTGTCTTCTGTTGGGC TTGGAACAGGGCTGCACACCTTTCTGCTTTATCTGGGTCCACATATAGCTTCAGTTACAT TAGCTGCTTATGAATGCAATTCAGTTAATTTCCCTGAACCACCCTATCCTGATCAGATTA TTTGTCCAGATGAAGAAGGCACTGAAGGAGCCATTTCTTTATGGAGCATCATCTCAAAAG TTAGAATTGAGGCCTGCATGTGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATT TCATGGCCAGGGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAATATCAGGAAT TTGAAGAGATGTTGGAACATGCACAGGCTGCACAAGACTTCGCCTCCCGAGCTAAACTGG CAGTTCAAAACCTAGTACAGAAGGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCAATTC CAAATCCTCTGTTTGATCTAGCTGGAATAACATGTGTTTTTTTTTTTTAACTCTTACTCT CTAATCCCTGCTTTTTGACTTGAGGCGGTAAGTGGATAGATTTTTCTTTAACATTTTTCG TGCTTTTCTCCCCATTCAGCAAACACATAGTGGAGCAGATGGTGGCTTTCATTGGTGCTG TCCCGGGCATAGGTCCGTCTCTGCAGAAGCCATTCCAGGAATACCTGGAGGCCCAGCGAC AGAAGCTTCACCACAAAAGCGAGATGGGCACTTTGCAGGGAGAAAACTGGTTGTCTTGGC TGTTTGAGAAGTTGGTCGTTGTAATGGTGTGTTACTTCATCCTGTCCATCATTAACTCCA TGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAAT AAGCAGAAAAAGTTTTTTTAACTGCAAAAATTTCAGTGGACGGGTTCTGCCGTAAATTGG GAGGACTCCAAACCAGGAAGGAAAATCCCCTTTTCCAACCTGAATCAAATTTTTTTTTTT TCCCCTGAAAGCAGTTTAAAACGTCCATGTTTTGCACTGACATACTTTTCCTTTGTGTAT TAAGGTAAGGTATCCACCCTCACTTCAATCCACGTTGTATTTTATCAGGGTGGAATTGAT GTTCAGCAGCAAACCTAAGTGAAACTGGCCTCTATTTGTTACTTACAAAGGCCCACATGG TACAATGAAAGAATTCCGGACACCCAAAAAAAAAAAAAAAAAATAGTTTCTAAGTATGTT AAATATGTCAAGCTTTTTAGGCTTGTCACAAATGACTTCTTTGTTTTTCTAAGTCATCAA AAGTGTATATAAATTATACTAGATTGGATAACAGTCTTGCATGTCTATCATGGTAAAATT TAACATGCCATCCTGCCCAGCCCTTCCTCTCCCACCTTCAAAAACAAAGGCCATTTTATG ATGCATTGCACACCCTCTCGGGAAACTGATCTTTACATTTTGAGACAGTATAAGGAAAAT CTTGTTGGTGTCTCACGAATGAGCTGACACCATTTTTTATCCTGTATATTTAGAATGAAG TCATGAAAAAACTTTATAAAGACATCTCTGATCATTCCAAAGTTGTGTCCGTTTTCTTTA GCGTTTTGATTTTTTACTTCTAGTTTCTACCAACCTAACGCACTTTAGCCAAATCCACCT ACAGCCACAGTCTTTTCAACCTTCATTTATTTGCTTGAACGAGCTGAGCTACCGCCAAGG CATTTTTTGTTGGGCTGGAATTGGGCAGCTAGCTCCCCACTGCTGAAATGGCGCCTTAGG AACTGGTGTATTGAGGGGATTTCTTGGTTTGCGAAAACAGAGATGAGATAATAGTGTACA AATCAAAGGACACAGAGAGAAAAATAACTTAAAAAAAAAGGCTTTCTCATATCAATTTTT AGCTCAGTGTGTACTCTGGTTTTAACAGAAATTTACTTTTACGTGTGACTAATTTTCTCG TTTAATAAGTGTTTTGTTCTTATGTGATTTTTCCTTTGGGATGTTTCTGGTTGAATTTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-183, + strand, RNAz p=0.595062 | |
| 469-2118, - strand, RNAz p=0.969569 | |
| 1413-1605, - strand, RNAz p=0.999593 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-183, + strand, RNAz p=0.595062 | |
| 469-2118, - strand, RNAz p=0.969569 | |
| 1413-1605, - strand, RNAz p=0.999593 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_030938, + |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-195, gnl|bosTau2|chr19 (4926927-4927121) | |
| 1-195, gnl|Hg17|chr17 (55139698-55139895) | |
| 1-195, gnl|Mm7|chr11 (86753849-86753644) | |
| 229-606, gnl|bosTau2|chr16 (5759380-5759744) | |
| 229-606, gnl|Mm7|chr5 (28866192-28865825) | |
| 635-804, gnl|bosTau2|chr19 (4988401-4988570) | |
| 635-804, gnl|canFam2|chr9 (37574188-37574384) | |
| 635-804, gnl|danRer3|chr22 (28086425-28086607) | |
| 635-804, gnl|echTel1|scaffold_318328 (42070-41877) | |
| 635-804, gnl|fr1|chrUn (242502949-242503148) | |
| 635-804, gnl|galGal2|chr19 (6899310-6899508) | |
| 635-804, gnl|hg17|chr17 (55197091-55197287) | |
| 635-804, gnl|Hg17|chr17 (55197113-55197282) | |
| 635-804, gnl|loxAfr1|scaffold_12202 (43651-43845) | |
| 635-804, gnl|mm7|chr11 (86713598-86713402) | |
| 635-804, gnl|Mm7|chr11 (86713574-86713405) | |
| 635-804, gnl|monDom2|scaffold_56 (2819914-2819721) | |
| 635-804, gnl|oryCun1|scaffold_131722 (13479-13281) | |
| 635-804, gnl|panTro1|chr19_random (40944049-40944245) | |
| 635-804, gnl|rheMac2|chr16 (44003256-44003452) | |
| 635-804, gnl|rn3|chr10 (74939666-74939470) | |
| 635-804, gnl|tetNig1|chrUn_random (89572384-89572558) | |
| 635-804, gnl|xenTro1|scaffold_38 (3150729-3150539) | |
| 1294-2580, gnl|bosTau2|chr19 (5065055-5066339) | |
| 1294-2580, gnl|Hg17|chr17 (55271906-55273186) | |
| 1294-2580, gnl|Mm7|chr11 (86655364-86654215) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-195, gnl|bosTau2|chr19 (4926927-4927121) | |
| 1-195, gnl|Hg17|chr17 (55139698-55139895) | |
| 1-195, gnl|Mm7|chr11 (86753849-86753644) | |
| 229-606, gnl|bosTau2|chr16 (5759380-5759744) | |
| 229-606, gnl|Mm7|chr5 (28866192-28865825) | |
| 635-804, gnl|bosTau2|chr19 (4988401-4988570) | |
| 635-804, gnl|canFam2|chr9 (37574188-37574384) | |
| 635-804, gnl|danRer3|chr22 (28086425-28086607) | |
| 635-804, gnl|echTel1|scaffold_318328 (42070-41877) | |
| 635-804, gnl|fr1|chrUn (242502949-242503148) | |
| 635-804, gnl|galGal2|chr19 (6899310-6899508) | |
| 635-804, gnl|hg17|chr17 (55197091-55197287) | |
| 635-804, gnl|Hg17|chr17 (55197113-55197282) | |
| 635-804, gnl|loxAfr1|scaffold_12202 (43651-43845) | |
| 635-804, gnl|mm7|chr11 (86713598-86713402) | |
| 635-804, gnl|Mm7|chr11 (86713574-86713405) | |
| 635-804, gnl|monDom2|scaffold_56 (2819914-2819721) | |
| 635-804, gnl|oryCun1|scaffold_131722 (13479-13281) | |
| 635-804, gnl|panTro1|chr19_random (40944049-40944245) | |
| 635-804, gnl|rheMac2|chr16 (44003256-44003452) | |
| 635-804, gnl|rn3|chr10 (74939666-74939470) | |
| 635-804, gnl|tetNig1|chrUn_random (89572384-89572558) | |
| 635-804, gnl|xenTro1|scaffold_38 (3150729-3150539) | |
| 1294-2580, gnl|bosTau2|chr19 (5065055-5066339) | |
| 1294-2580, gnl|Hg17|chr17 (55271906-55273186) | |
| 1294-2580, gnl|Mm7|chr11 (86655364-86654215) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| pro (0.512033) | |
| liv (0.438853) | |
| kid (0.389206) | |
| cmu (0.372787) | |
| sin (0.349895) | |
| nco (0.323468) | |
| mga (0.32041) | |
| sme (0.305437) | |
| bfe (0.299715) | |
| jej (0.296765) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| mgp (0.230681) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| rec (0.17307) | |
| duo (0.172801) | |
| lun (0.150489) | |
| isp (0.150376) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| liv (0.438853) | |
| kid (0.389206) | |
| cmu (0.372787) | |
| sin (0.349895) | |
| nco (0.323468) | |
| mga (0.32041) | |
| sme (0.305437) | |
| bfe (0.299715) | |
| jej (0.296765) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| mgp (0.230681) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| rec (0.17307) | |
| duo (0.172801) | |
| lun (0.150489) | |
| isp (0.150376) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| ldo (0.0970026) |