Non-Coding RNA Search

Ss1.1-Pig3-SRG8012C07.5

Sequence:


               
               CCTGTGCACGAGCTCGGCCGCAACCAGCAACGGCAGGAGTGGGAGTTCCCGCCACACACC
ACCGAGGCCACCTGCAACCTGTGGTGTGTCTACGTGCACGAGACGGTCCTGGGCATCCCT
CGTGGACGTGCCAATATTGCTCTGTGGCCCCCAGTTCGGGAGAAGAGAGTCAGAATCTAC
CTGGGCAAGGGTCCCAATGTGAAAAACTGGAATGCGTGGACGGCGCTGGAAACATACTTA
CAGCTCCAGGAGGCCTTCGGGTGGGAGCCGTTCATCCGTCTCTTCACCGAGTACAGGAAC
CAGACCAACCTGCCCACCGACAACGTCGACAAGATGAACCTGTGGGTGAAGATGTTCTCC
CACCAAGTGCAGAAGAACCTGGCCCCGTTCTTCGAGGCCTGGGCCTGGCCGATCCAGAAG
GAGGTGGCGACCAGCCTGGCCTACCTGCCTGAATGGAAGGAAAATATTATGAAATTGTAC
CTCCTCACACAGATGTAAGGAGTGCCCAGCGAGGTGGCAGGCCCCACTGAAACCGAAGAC
AAGAAACGTCAAAGAGAATCGACACATCTCAGCAAAGAAGAACGGAAGCAGCAAATGTGT
AGTGAAGAAGATCTCAGCAAATGTGTGGGAGAAACGACGAAAGAGTACAGCTGCTTTCGG
ACAGGACATAAGCAGATCAGAACAGCCTAACCCCAGAGAAATGTGGGCGTCTGAAAAATC
CATCAGTTGTGAACCTGAACCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTGCACGAGCTCGGCCGCAACCAGCAACGGCAGGAGTGGGAGTTCCCGCCACACACC
ACCGAGGCCACCTGCAACCTGTGGTGTGTCTACGTGCACGAGACGGTCCTGGGCATCCCT
CGTGGACGTGCCAATATTGCTCTGTGGCCCCCAGTTCGGGAGAAGAGAGTCAGAATCTAC
CTGGGCAAGGGTCCCAATGTGAAAAACTGGAATGCGTGGACGGCGCTGGAAACATACTTA
CAGCTCCAGGAGGCCTTCGGGTGGGAGCCGTTCATCCGTCTCTTCACCGAGTACAGGAAC
CAGACCAACCTGCCCACCGACAACGTCGACAAGATGAACCTGTGGGTGAAGATGTTCTCC
CACCAAGTGCAGAAGAACCTGGCCCCGTTCTTCGAGGCCTGGGCCTGGCCGATCCAGAAG
GAGGTGGCGACCAGCCTGGCCTACCTGCCTGAATGGAAGGAAAATATTATGAAATTGTAC
CTCCTCACACAGATGTAAGGAGTGCCCAGCGAGGTGGCAGGCCCCACTGAAACCGAAGAC
AAGAAACGTCAAAGAGAATCGACACATCTCAGCAAAGAAGAACGGAAGCAGCAAATGTGT
AGTGAAGAAGATCTCAGCAAATGTGTGGGAGAAACGACGAAAGAGTACAGCTGCTTTCGG
ACAGGACATAAGCAGATCAGAACAGCCTAACCCCAGAGAAATGTGGGCGTCTGAAAAATC
CATCAGTTGTGAACCTGAACCCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26327757|dbj|BAC25066.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26327757|dbj|BAC25066.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               278-521, - strand, RNAz p=0.993279

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               278-521, - strand, RNAz p=0.993279

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               238-521, gnl|bosTau2|chr4 (58445004-58444721)
               

               
               238-521, gnl|canFam2|chr16 (9072901-9073095)
               

               
               238-521, gnl|danRer3|chr15 (2381198-2381004)
               

               
               238-521, gnl|dasNov1|scaffold_49343 (3546-3742)
               

               
               238-521, gnl|fr1|chrUn (187975867-187976057)
               

               
               238-521, gnl|hg17|chr7 (142818500-142818696)
               

               
               238-521, gnl|Hg17|chr7 (142992097-142991814)
               

               
               238-521, gnl|loxAfr1|scaffold_95230 (4108-3909)
               

               
               238-521, gnl|mm7|chr6 (42616637-42616432)
               

               
               238-521, gnl|Mm7|chr6 (42616626-42616334)
               

               
               238-521, gnl|monDom2|scaffold_7 (2967085-2967288)
               

               
               238-521, gnl|oryCun1|scaffold_172691 (54915-54720)
               

               
               238-521, gnl|panTro1|chr6 (145682302-145682106)
               

               
               238-521, gnl|rheMac2|chr3 (181239991-181239795)
               

               
               238-521, gnl|rn3|chr4 (70802147-70801948)
               

               
               238-521, gnl|tetNig1|chr16 (7943433-7943617)
               

               
               238-521, gnl|xenTro1|scaffold_62 (2634249-2634056)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               238-521, gnl|bosTau2|chr4 (58445004-58444721)
               

               
               238-521, gnl|canFam2|chr16 (9072901-9073095)
               

               
               238-521, gnl|danRer3|chr15 (2381198-2381004)
               

               
               238-521, gnl|dasNov1|scaffold_49343 (3546-3742)
               

               
               238-521, gnl|fr1|chrUn (187975867-187976057)
               

               
               238-521, gnl|hg17|chr7 (142818500-142818696)
               

               
               238-521, gnl|Hg17|chr7 (142992097-142991814)
               

               
               238-521, gnl|loxAfr1|scaffold_95230 (4108-3909)
               

               
               238-521, gnl|mm7|chr6 (42616637-42616432)
               

               
               238-521, gnl|Mm7|chr6 (42616626-42616334)
               

               
               238-521, gnl|monDom2|scaffold_7 (2967085-2967288)
               

               
               238-521, gnl|oryCun1|scaffold_172691 (54915-54720)
               

               
               238-521, gnl|panTro1|chr6 (145682302-145682106)
               

               
               238-521, gnl|rheMac2|chr3 (181239991-181239795)
               

               
               238-521, gnl|rn3|chr4 (70802147-70801948)
               

               
               238-521, gnl|tetNig1|chr16 (7943433-7943617)
               

               
               238-521, gnl|xenTro1|scaffold_62 (2634249-2634056)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               ldo (0.0970026)

	238-521, gnl\|bosTau2\|chr4 (58445004-58444721)
	238-521, gnl\|canFam2\|chr16 (9072901-9073095)
	238-521, gnl\|danRer3\|chr15 (2381198-2381004)
	238-521, gnl\|dasNov1\|scaffold_49343 (3546-3742)
	238-521, gnl\|fr1\|chrUn (187975867-187976057)
	238-521, gnl\|hg17\|chr7 (142818500-142818696)
	238-521, gnl\|Hg17\|chr7 (142992097-142991814)
	238-521, gnl\|loxAfr1\|scaffold_95230 (4108-3909)
	238-521, gnl\|mm7\|chr6 (42616637-42616432)
	238-521, gnl\|Mm7\|chr6 (42616626-42616334)
	238-521, gnl\|monDom2\|scaffold_7 (2967085-2967288)
	238-521, gnl\|oryCun1\|scaffold_172691 (54915-54720)
	238-521, gnl\|panTro1\|chr6 (145682302-145682106)
	238-521, gnl\|rheMac2\|chr3 (181239991-181239795)
	238-521, gnl\|rn3\|chr4 (70802147-70801948)
	238-521, gnl\|tetNig1\|chr16 (7943433-7943617)
	238-521, gnl\|xenTro1\|scaffold_62 (2634249-2634056)

	fhi (0.169578)
	nco (0.161734)
	mga (0.160205)
	isp (0.150376)
	hlv (0.139256)
	cov (0.132153)
	ldo (0.0970026)