Non-Coding RNA Search

Ss1.1-Pig3-SRG8012C16.5

Sequence:


               
               AACCTGGGGCTGCCTTTCGCCACGCCGGAGGAGTTCTTTCTGAAGTGGCCGGTGGCCCGC
TTTGAGCTGCCAGCCTTTGACCCGAGGACCGTCTCCCGCTCTGGGCCTCTCTGCCTCCCC
GAGTCCAGCTCCCTCTTAAGCCCGGACCCTGAGGTGGTCGTCGCCGTGGGATTTCCTGGG
GCCGGCAAGTCCACCTTCCTCCGGGAGCATCTCGTGTCTGCCGGCTACGTCCACGTGAAC
AGGGACACCTTGGGCTCCTGGCAGCGCTGCGTGACCACCTGCGAGGCAGCTCTGAAGCAA
CGGAAACGGGTCGTGATCGATAACACGAACCCGGACCTCCAGAGCCGGGCCAGGTACATC
AAGTGTGCCCGAGACGCAGGCGTCCCCTGCCGCTGCTTCCTCTTCAGCGCCAGCCTGGAG
CAGGCACGTCACAACAACCGGTTCCGGGAGATGACGGACCCCTCCCACGTCCCCGTGTCC
GACATCGTCATCTACGGCTACAGGAAGCAGTTCGAAGCACCCACGCTGGCCGAAGGCTTC
GCGGCCGTCCTGGAGATCCCGTTCCGGCTGCACGTGGCGCCGCAGCTTGAGCGGCTGTAC
CGCCAGTTCTCAGAGGGCTGAGCCACCCCTGCCCGCTCCCAATGCCCAATAAACGCTCTT
TTCTTCAAAAAACTGTACCGCCAGTTCTCAGAGGGCTGAGCCACCCCTGCCCGCTCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCTGGGGCTGCCTTTCGCCACGCCGGAGGAGTTCTTTCTGAAGTGGCCGGTGGCCCGC
TTTGAGCTGCCAGCCTTTGACCCGAGGACCGTCTCCCGCTCTGGGCCTCTCTGCCTCCCC
GAGTCCAGCTCCCTCTTAAGCCCGGACCCTGAGGTGGTCGTCGCCGTGGGATTTCCTGGG
GCCGGCAAGTCCACCTTCCTCCGGGAGCATCTCGTGTCTGCCGGCTACGTCCACGTGAAC
AGGGACACCTTGGGCTCCTGGCAGCGCTGCGTGACCACCTGCGAGGCAGCTCTGAAGCAA
CGGAAACGGGTCGTGATCGATAACACGAACCCGGACCTCCAGAGCCGGGCCAGGTACATC
AAGTGTGCCCGAGACGCAGGCGTCCCCTGCCGCTGCTTCCTCTTCAGCGCCAGCCTGGAG
CAGGCACGTCACAACAACCGGTTCCGGGAGATGACGGACCCCTCCCACGTCCCCGTGTCC
GACATCGTCATCTACGGCTACAGGAAGCAGTTCGAAGCACCCACGCTGGCCGAAGGCTTC
GCGGCCGTCCTGGAGATCCCGTTCCGGCTGCACGTGGCGCCGCAGCTTGAGCGGCTGTAC
CGCCAGTTCTCAGAGGGCTGAGCCACCCCTGCCCGCTCCCAATGCCCAATAAACGCTCTT
TTCTTCAAAAAACTGTACCGCCAGTTCTCAGAGGGCTGAGCCACCCCTGCCCGCTCCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62738646|pdb|1YJ5|B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62738646|pdb|1YJ5|B

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               243-357, gnl|bosTau2|chr18 (48896504-48896390)
               

               
               243-357, gnl|Hg17|chr19 (55056951-55056837)
               

               
               243-357, gnl|Mm7|chr7 (41036170-41036284)
               


               
               501-640, gnl|bosTau2|chr18 (48896000-48895861)
               

               
               501-640, gnl|canFam2|chr1 (109589571-109589433)
               

               
               501-640, gnl|fr1|chrUn (284508343-284508491)
               

               
               501-640, gnl|hg17|chr19 (55056301-55056435)
               

               
               501-640, gnl|Hg17|chr19 (55056437-55056314)
               

               
               501-640, gnl|mm7|chr7 (41037150-41037022)
               

               
               501-640, gnl|Mm7|chr7 (41037020-41037150)
               

               
               501-640, gnl|monDom2|scaffold_105 (3959735-3959597)
               

               
               501-640, gnl|rheMac2|chr19 (56140294-56140428)
               

               
               501-640, gnl|rn3|chr1 (95413553-95413425)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               243-357, gnl|bosTau2|chr18 (48896504-48896390)
               

               
               243-357, gnl|Hg17|chr19 (55056951-55056837)
               

               
               243-357, gnl|Mm7|chr7 (41036170-41036284)
               


               
               501-640, gnl|bosTau2|chr18 (48896000-48895861)
               

               
               501-640, gnl|canFam2|chr1 (109589571-109589433)
               

               
               501-640, gnl|fr1|chrUn (284508343-284508491)
               

               
               501-640, gnl|hg17|chr19 (55056301-55056435)
               

               
               501-640, gnl|Hg17|chr19 (55056437-55056314)
               

               
               501-640, gnl|mm7|chr7 (41037150-41037022)
               

               
               501-640, gnl|Mm7|chr7 (41037020-41037150)
               

               
               501-640, gnl|monDom2|scaffold_105 (3959735-3959597)
               

               
               501-640, gnl|rheMac2|chr19 (56140294-56140428)
               

               
               501-640, gnl|rn3|chr1 (95413553-95413425)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cga (0.558191)
               

               
               cov (0.264306)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               pty (0.142714)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.558191)
               

               
               cov (0.264306)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               pty (0.142714)

	243-357, gnl\|bosTau2\|chr18 (48896504-48896390)
	243-357, gnl\|Hg17\|chr19 (55056951-55056837)
	243-357, gnl\|Mm7\|chr7 (41036170-41036284)

	501-640, gnl\|bosTau2\|chr18 (48896000-48895861)
	501-640, gnl\|canFam2\|chr1 (109589571-109589433)
	501-640, gnl\|fr1\|chrUn (284508343-284508491)
	501-640, gnl\|hg17\|chr19 (55056301-55056435)
	501-640, gnl\|Hg17\|chr19 (55056437-55056314)
	501-640, gnl\|mm7\|chr7 (41037150-41037022)
	501-640, gnl\|Mm7\|chr7 (41037020-41037150)
	501-640, gnl\|monDom2\|scaffold_105 (3959735-3959597)
	501-640, gnl\|rheMac2\|chr19 (56140294-56140428)
	501-640, gnl\|rn3\|chr1 (95413553-95413425)

	cga (0.558191)
	cov (0.264306)
	ill (0.175593)
	ton (0.1755)
	duo (0.172801)
	pty (0.142714)