Non-Coding RNA Search

Ss1.1-Pig3-SRG8012C19.5

Sequence:


               
               CCAGGTTGCCTACTCCGATGCCAGCCCGTTCTTGATCCTTTCGGAGGCGTCGCTGGCGGA
TCTGAACTCCCGGCTAGAGAAAAAGGTGAAAGCAGCCAACTTCAGGCCCAATATCGTCAT
TTCAGGATGCGATGCCTACGCGGAGGACTCGTGGGATGAGATTCTTATAGGTGACGTGGA
ACTGAAGAGGGTGATGGCTTGTTACAGGTGCGTTTTAACCACAGTGGACCCGGACACCGG
CATCATGAGCAGGAAGGAGCCGCTGGAGACCCTGAGGAGCAATTCAGGATCCACACGCTT
CCATGCCGTTACCTGTCCCATCTTGGACCAGGACATCGCTGAAACCCAGAAAGGATGCTC
ATCTTCACGGATGCAGGATCAGGGGCTGGGGTGGGGTGTCAGGTCTCATATTTACAGCCC
TTGAGACGCTCGGCTTTGCCCTGACCTGCATCCTGGGGTGTCACTTGTGGTGGGGGGGAG
ACAGTGACGCCGGCTTTAGGCAAAGCCCTGGAAGCCTCAAGTTTGGGCATCTGACATCCC
ACACTGAGGTCTATGGGATGAGTGGCCAACAGGAACCTGCTGCAGTGCACAGAGAACGCT
CCCCAGTGTTGTGTGATGATCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGTTGCCTACTCCGATGCCAGCCCGTTCTTGATCCTTTCGGAGGCGTCGCTGGCGGA
TCTGAACTCCCGGCTAGAGAAAAAGGTGAAAGCAGCCAACTTCAGGCCCAATATCGTCAT
TTCAGGATGCGATGCCTACGCGGAGGACTCGTGGGATGAGATTCTTATAGGTGACGTGGA
ACTGAAGAGGGTGATGGCTTGTTACAGGTGCGTTTTAACCACAGTGGACCCGGACACCGG
CATCATGAGCAGGAAGGAGCCGCTGGAGACCCTGAGGAGCAATTCAGGATCCACACGCTT
CCATGCCGTTACCTGTCCCATCTTGGACCAGGACATCGCTGAAACCCAGAAAGGATGCTC
ATCTTCACGGATGCAGGATCAGGGGCTGGGGTGGGGTGTCAGGTCTCATATTTACAGCCC
TTGAGACGCTCGGCTTTGCCCTGACCTGCATCCTGGGGTGTCACTTGTGGTGGGGGGGAG
ACAGTGACGCCGGCTTTAGGCAAAGCCCTGGAAGCCTCAAGTTTGGGCATCTGACATCCC
ACACTGAGGTCTATGGGATGAGTGGCCAACAGGAACCTGCTGCAGTGCACAGAGAACGCT
CCCCAGTGTTGTGTGATGATCCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55665266|emb|CAH72118.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55665266|emb|CAH72118.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-146, gnl|bosTau2|chr16 (10616450-10616306)
               

               
               2-146, gnl|Hg17|chr1 (217359608-217359752)
               

               
               2-146, gnl|Mm7|chr1 (184327624-184327480)
               


               
               280-480, gnl|bosTau2|chr16 (10613037-10612827)
               

               
               280-480, gnl|Hg17|chr1 (217367879-217368132)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-146, gnl|bosTau2|chr16 (10616450-10616306)
               

               
               2-146, gnl|Hg17|chr1 (217359608-217359752)
               

               
               2-146, gnl|Mm7|chr1 (184327624-184327480)
               


               
               280-480, gnl|bosTau2|chr16 (10613037-10612827)
               

               
               280-480, gnl|Hg17|chr1 (217367879-217368132)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nca (0.136874)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               cov (0.132153)

	2-146, gnl\|bosTau2\|chr16 (10616450-10616306)
	2-146, gnl\|Hg17\|chr1 (217359608-217359752)
	2-146, gnl\|Mm7\|chr1 (184327624-184327480)

	280-480, gnl\|bosTau2\|chr16 (10613037-10612827)
	280-480, gnl\|Hg17\|chr1 (217367879-217368132)