Ss1.1-Pig3-SRG8012D01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTTCGTATCATGTCCCTGAGGAGCAGCCTCTCGCGTCTCCTCCGGACGCAAGTGCATTC CGCCCCGAAGAAGTCCGTCCACTCCGTGGCTGTGATTGGAGCCCCATTCTCACGGGGGCG GAAAAGAAAAGGAGTGGAATATGGTCCGGCTGCTGTAAGGGAAGCTGGCTTGATGAAAAG GCTCTCTGATTTGGGCTGCCACCTTAAAGACTTCGGAGATTTGAGTTTTACTCCAGTTCC CAAAGATGATCTCTACAACAACCTGATAGTGAATCCTCGCTCAGTGGGCCTCGCCAACCA GGAACTAGCAGAGGTCGTCAGTAGAGCGGTGTCAGGTGGCTATAGCTGTGTCACGGTGGG AGGAGACCACAGCCTGGCAATTGGTACCATTAGTGGCCACGCCCGGCACTGCCCAGACCT TTGTGTGATCTGGGTTGATGCCCATGCTGACATCAATACACCCCTCACCACTTCATCTGG AAATCTCCATGGACAACCAGTTTCATTTCTCCTCAGAGAACTACAGGACAAGGTACCACA ACTCCCAGGATTTTCCTGGATCAAGCCTTGTATCTCTTCCCCAAGTATTGTGTATATTGG ACTAAGAGACGTGGACCCTCCTGAACATTTTATTTTAAAGAATTACGATATCCAGTATTT CTCTATGAGAGACATAGATCGACTTGGTATCCAGAAGGTCATGGAACAGACGTTTGATCT GCTGATTGGCAAAAGACAAAGGCCAATCCATCTGAGTTTTGATATTGATGCATTTGACCC TACCCTGGCTCCAGCCACAGGAACTCCTGTTGTAGGGGGACTAACCTATCGAGAAGGCAT GTATATTACTGAGGAAATACACAATACAGGGTTGCTCTCAGCATTGGATCTTGTTGAAGT CAATCCTCGGCTGGCCGCTTCAGAGGAAGAGGCCAAGGCTACGGCCAGCCTGGCAGTGGA TGTGATTGCTTCAAGTTTTGGGCAGACAAGGGAGGGAGGGCACATTGTCTATGACCACCT TCCTACTCCCAGTTCACCAGAGGAATCGGACAGTGAAGAACGTGTACGGATTTAGGAAAC ACTGGCTGCTGACACAATGAGCCTCCTCGAGTTGGGAGGCATGTGAGGTGACAGACCCTA AATGTTCGTCTGGGTCAGTACTGCCTTAATGAGAACATTTGTGCATTCTCACAACTGCAA AGTTTCCTTCCCCTTCACTTTGGTGACTGATAATACTGCTGTAAATGTATTTGGGGTTTT TTTTGAAGCTCACAGAGTATTAATATGGGGGAGTACTCTGTAAAAACGTAAAGAAGTCAT AAACAGCATTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTTCGTATCATGTCCCTGAGGAGCAGCCTCTCGCGTCTCCTCCGGACGCAAGTGCATTC CGCCCCGAAGAAGTCCGTCCACTCCGTGGCTGTGATTGGAGCCCCATTCTCACGGGGGCG GAAAAGAAAAGGAGTGGAATATGGTCCGGCTGCTGTAAGGGAAGCTGGCTTGATGAAAAG GCTCTCTGATTTGGGCTGCCACCTTAAAGACTTCGGAGATTTGAGTTTTACTCCAGTTCC CAAAGATGATCTCTACAACAACCTGATAGTGAATCCTCGCTCAGTGGGCCTCGCCAACCA GGAACTAGCAGAGGTCGTCAGTAGAGCGGTGTCAGGTGGCTATAGCTGTGTCACGGTGGG AGGAGACCACAGCCTGGCAATTGGTACCATTAGTGGCCACGCCCGGCACTGCCCAGACCT TTGTGTGATCTGGGTTGATGCCCATGCTGACATCAATACACCCCTCACCACTTCATCTGG AAATCTCCATGGACAACCAGTTTCATTTCTCCTCAGAGAACTACAGGACAAGGTACCACA ACTCCCAGGATTTTCCTGGATCAAGCCTTGTATCTCTTCCCCAAGTATTGTGTATATTGG ACTAAGAGACGTGGACCCTCCTGAACATTTTATTTTAAAGAATTACGATATCCAGTATTT CTCTATGAGAGACATAGATCGACTTGGTATCCAGAAGGTCATGGAACAGACGTTTGATCT GCTGATTGGCAAAAGACAAAGGCCAATCCATCTGAGTTTTGATATTGATGCATTTGACCC TACCCTGGCTCCAGCCACAGGAACTCCTGTTGTAGGGGGACTAACCTATCGAGAAGGCAT GTATATTACTGAGGAAATACACAATACAGGGTTGCTCTCAGCATTGGATCTTGTTGAAGT CAATCCTCGGCTGGCCGCTTCAGAGGAAGAGGCCAAGGCTACGGCCAGCCTGGCAGTGGA TGTGATTGCTTCAAGTTTTGGGCAGACAAGGGAGGGAGGGCACATTGTCTATGACCACCT TCCTACTCCCAGTTCACCAGAGGAATCGGACAGTGAAGAACGTGTACGGATTTAGGAAAC ACTGGCTGCTGACACAATGAGCCTCCTCGAGTTGGGAGGCATGTGAGGTGACAGACCCTA AATGTTCGTCTGGGTCAGTACTGCCTTAATGAGAACATTTGTGCATTCTCACAACTGCAA AGTTTCCTTCCCCTTCACTTTGGTGACTGATAATACTGCTGTAAATGTATTTGGGGTTTT TTTTGAAGCTCACAGAGTATTAATATGGGGGAGTACTCTGTAAAAACGTAAAGAAGTCAT AAACAGCATTTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 375-473, - strand, RNAz p=0.959043 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 375-473, - strand, RNAz p=0.959043 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 8-117, gnl|bosTau2|chr10 (53611301-53611410) | |
| 8-117, gnl|canFam2|chr8 (44623281-44623740) | |
| 8-117, gnl|dasNov1|scaffold_3587 (12651-12212) | |
| 8-117, gnl|hg17|chr14 (67156063-67156523) | |
| 8-117, gnl|Hg17|chr14 (67156445-67156554) | |
| 8-117, gnl|mm7|chr12 (77088983-77089422) | |
| 8-117, gnl|Mm7|chr12 (77089344-77089453) | |
| 8-117, gnl|monDom2|scaffold_8 (82993178-82993654) | |
| 8-117, gnl|panTro1|chr15 (66774567-66775027) | |
| 8-117, gnl|rheMac2|chr7 (130731557-130732024) | |
| 8-117, gnl|rn3|chr6 (101904857-101905287) | |
| 194-372, gnl|bosTau2|chr10 (53634588-53634766) | |
| 194-372, gnl|Hg17|chr14 (67178655-67178833) | |
| 194-372, gnl|Mm7|chr12 (77106064-77106242) | |
| 375-535, gnl|bosTau2|chr9 (40013587-40013747) | |
| 375-535, gnl|canFam2|chr12 (3246456-3246278) | |
| 375-535, gnl|danRer3|chr12 (8525939-8526110) | |
| 375-535, gnl|dasNov1|scaffold_7716 (47963-47785) | |
| 375-535, gnl|echTel1|scaffold_287564 (52285-52107) | |
| 375-535, gnl|fr1|chrUn (278839618-278839449) | |
| 375-535, gnl|hg17|chr6 (131944039-131944217) | |
| 375-535, gnl|Hg17|chr6 (131944054-131944214) | |
| 375-535, gnl|loxAfr1|scaffold_24121 (10808-10971) | |
| 375-535, gnl|mm7|chr10 (24670745-24670567) | |
| 375-535, gnl|Mm7|chr10 (24670728-24670568) | |
| 375-535, gnl|monDom2|scaffold_0 (80383215-80383036) | |
| 375-535, gnl|oryCun1|scaffold_211863 (32421-32598) | |
| 375-535, gnl|panTro1|chr5 (134607474-134607652) | |
| 375-535, gnl|rheMac2|chr4 (132295957-132295779) | |
| 375-535, gnl|rn3|chr1 (21008081-21008259) | |
| 375-535, gnl|tetNig1|chr2 (2330501-2330655) | |
| 375-535, gnl|xenTro1|scaffold_505 (622836-623011) | |
| 628-732, gnl|bosTau2|chr10 (53641322-53641426) | |
| 628-732, gnl|Hg17|chr14 (67183391-67183495) | |
| 628-732, gnl|Mm7|chr12 (77109430-77109534) | |
| 867-1304, gnl|bosTau2|chr10 (53645143-53645584) | |
| 867-1304, gnl|Hg17|chr14 (67187182-67187618) | |
| 867-1304, gnl|Mm7|chr12 (77114300-77114734) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-117, gnl|bosTau2|chr10 (53611301-53611410) | |
| 8-117, gnl|canFam2|chr8 (44623281-44623740) | |
| 8-117, gnl|dasNov1|scaffold_3587 (12651-12212) | |
| 8-117, gnl|hg17|chr14 (67156063-67156523) | |
| 8-117, gnl|Hg17|chr14 (67156445-67156554) | |
| 8-117, gnl|mm7|chr12 (77088983-77089422) | |
| 8-117, gnl|Mm7|chr12 (77089344-77089453) | |
| 8-117, gnl|monDom2|scaffold_8 (82993178-82993654) | |
| 8-117, gnl|panTro1|chr15 (66774567-66775027) | |
| 8-117, gnl|rheMac2|chr7 (130731557-130732024) | |
| 8-117, gnl|rn3|chr6 (101904857-101905287) | |
| 194-372, gnl|bosTau2|chr10 (53634588-53634766) | |
| 194-372, gnl|Hg17|chr14 (67178655-67178833) | |
| 194-372, gnl|Mm7|chr12 (77106064-77106242) | |
| 375-535, gnl|bosTau2|chr9 (40013587-40013747) | |
| 375-535, gnl|canFam2|chr12 (3246456-3246278) | |
| 375-535, gnl|danRer3|chr12 (8525939-8526110) | |
| 375-535, gnl|dasNov1|scaffold_7716 (47963-47785) | |
| 375-535, gnl|echTel1|scaffold_287564 (52285-52107) | |
| 375-535, gnl|fr1|chrUn (278839618-278839449) | |
| 375-535, gnl|hg17|chr6 (131944039-131944217) | |
| 375-535, gnl|Hg17|chr6 (131944054-131944214) | |
| 375-535, gnl|loxAfr1|scaffold_24121 (10808-10971) | |
| 375-535, gnl|mm7|chr10 (24670745-24670567) | |
| 375-535, gnl|Mm7|chr10 (24670728-24670568) | |
| 375-535, gnl|monDom2|scaffold_0 (80383215-80383036) | |
| 375-535, gnl|oryCun1|scaffold_211863 (32421-32598) | |
| 375-535, gnl|panTro1|chr5 (134607474-134607652) | |
| 375-535, gnl|rheMac2|chr4 (132295957-132295779) | |
| 375-535, gnl|rn3|chr1 (21008081-21008259) | |
| 375-535, gnl|tetNig1|chr2 (2330501-2330655) | |
| 375-535, gnl|xenTro1|scaffold_505 (622836-623011) | |
| 628-732, gnl|bosTau2|chr10 (53641322-53641426) | |
| 628-732, gnl|Hg17|chr14 (67183391-67183495) | |
| 628-732, gnl|Mm7|chr12 (77109430-77109534) | |
| 867-1304, gnl|bosTau2|chr10 (53645143-53645584) | |
| 867-1304, gnl|Hg17|chr14 (67187182-67187618) | |
| 867-1304, gnl|Mm7|chr12 (77114300-77114734) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| elu (0.385356) | |
| fce (0.271592) | |
| ecc (0.23007) | |
| col (0.195008) | |
| pgl (0.118483) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| fce (0.271592) | |
| ecc (0.23007) | |
| col (0.195008) | |
| pgl (0.118483) |