Non-Coding RNA Search

Ss1.1-Pig3-SRG8012D07.5

Sequence:


               
               CAGCAGTAGCTGTATTTTTCATCATGTTAATAGTGTATGTGCGATTCTGGTGGCTGTGAA
GTAGTGAATCCCGTCATTGTCAGAGGAGAACCTAGAACCTGGCAGGTGTATGTTTTCAGG
AAGCTGAGCTCACAGAGATGTGTATTAGAATTCAAGTGGAACTTCTGCCTCTAAAGACCT
TGCAAGAAAAGACATGTCCTGAAAATGAAAGATTACACCTCATTTAATGAAGCTTAACCC
TATGTAGAAAGTCTCTTGGGGGCAGAGGCTTTCTCTGGGTGCTAAGCCATATATGTTAGG
GAACAGTAGGTTGTTTTATTTTGTTTTTTCCCCTCCCAGTGTTTTATATTTTAGATCAGC
ACTCACTGGGGCATTCTCATTCTCTAATGGAGCCGTCAGTGAGATTTGGCTTAACCAACC
TGTGCTAGCAACAGTTTGAAATCCCTTCAGAGAAGGCAACCCTTTGGAAAGTTTTTTGAC
CATCTAATCAACATTCCTTTTGTTGGTGACATTTGTTATTTTCAGGAATCTGAGTTGTTG
ATGGCCTTTTAAACAAGACTCCAGTATGTGAAGGTTAATTGCTGTGCTGCAAGAGATCCT
ATCTGTTGGCCCCTGTAGAAAGTTAGCCTTTGTTATTTTCCCTTTATAATATTTTGCTTA
TTGTACAATTGCTCTTAGGGTTAAATGAATTATATTAAGATGCCTGAAATTATATTATAG
CACTCCTTGATTAAGAAGCTAACATGTTTTCTGTCATTTACTCCTCAAAAGACTTAAAAT
TAGTTTGGGACATTCTTAATTTTATTTTTATGCATCTGGTTTATATTAATATATGAGTGA
GTACAGCATATGGATAGTCAGAGACCCCTGACTTAGTGAAAAGCAAGGCCAGCTCATAAC
TACAGCTTTGTCCTGCCCCTTTCTCACTTTCTCCACTATGGTTTTCCTCTCTTTCTCTTG
CCAGAATTTTCTAACATTTTAAAAATTCCTCTGTGTCCAGTAGTTTCAAGTCCATTAAGT
ATCTTCTCAGGATATTCTCAAATTTCAAAATAGAAAATGTTCAGCTGTGTAGTTAATTAA
ATTTAAATTTTTCTGGAACAACTGCTCAAACTATTAAATACATTTATCAAGTCTGAGAGC
ACTTCATACCTGCTTCAGTTATGGAAATTCTCTGAGAATGTTCTAGAGATAGGTAACTGA
TATCACAGTAGCTTCTAATAACAAACAAATACTTATGATTTTTCCCTTTTTTGCTCAGGG
ATGATGAGGATTTCCTCTTACCTTCTGAGGTAGAATTTTCTAAATGGGGAAAACAGGCCT
TTTAAATACTGTCACAAGGCTCTACAGTATAACCTATAACTCCTATACACACTGCAAATA
TTTCTTTAAATTGTACAGGTACATGAGCCACCTTCTTACTTCTTAAAATCTTTGGAAAGA
CCTTTAACCAGTAAGCAATTTTATAACTCAGGATCATCAAAGCTACTGTTCTGATTCCTG
ATAGAGAAAAACATCCTATTTCCTTATAACAAGGCAAGGAGAAATGCTTATTTTATTCCT
GATAATTTACAGAACTAGAATAAAGTTTTTTTCTTTCCATTTTGGACTTAAGTCTGCCAA
TTGGACTTTTGTGCATGAAATAAGTTACTTTTTATAGAGAATAAGTGCTTTTAAGTTCCT
AAAAGGCTTGTCCCTAAGTAATGATGTTGGTAATAAAAGCCTTTGAAAGGCTGAAAACCT
AAGTAGCATTTGGTACTTCTGTAGGAGTGGAGAATGGCAGCTTGTTGTTGAGAGTTGCAT
ACTGCAGCCAAGTGGTCAGCAATGAAATAAATACTTCTAGAATGTTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAGTAGCTGTATTTTTCATCATGTTAATAGTGTATGTGCGATTCTGGTGGCTGTGAA
GTAGTGAATCCCGTCATTGTCAGAGGAGAACCTAGAACCTGGCAGGTGTATGTTTTCAGG
AAGCTGAGCTCACAGAGATGTGTATTAGAATTCAAGTGGAACTTCTGCCTCTAAAGACCT
TGCAAGAAAAGACATGTCCTGAAAATGAAAGATTACACCTCATTTAATGAAGCTTAACCC
TATGTAGAAAGTCTCTTGGGGGCAGAGGCTTTCTCTGGGTGCTAAGCCATATATGTTAGG
GAACAGTAGGTTGTTTTATTTTGTTTTTTCCCCTCCCAGTGTTTTATATTTTAGATCAGC
ACTCACTGGGGCATTCTCATTCTCTAATGGAGCCGTCAGTGAGATTTGGCTTAACCAACC
TGTGCTAGCAACAGTTTGAAATCCCTTCAGAGAAGGCAACCCTTTGGAAAGTTTTTTGAC
CATCTAATCAACATTCCTTTTGTTGGTGACATTTGTTATTTTCAGGAATCTGAGTTGTTG
ATGGCCTTTTAAACAAGACTCCAGTATGTGAAGGTTAATTGCTGTGCTGCAAGAGATCCT
ATCTGTTGGCCCCTGTAGAAAGTTAGCCTTTGTTATTTTCCCTTTATAATATTTTGCTTA
TTGTACAATTGCTCTTAGGGTTAAATGAATTATATTAAGATGCCTGAAATTATATTATAG
CACTCCTTGATTAAGAAGCTAACATGTTTTCTGTCATTTACTCCTCAAAAGACTTAAAAT
TAGTTTGGGACATTCTTAATTTTATTTTTATGCATCTGGTTTATATTAATATATGAGTGA
GTACAGCATATGGATAGTCAGAGACCCCTGACTTAGTGAAAAGCAAGGCCAGCTCATAAC
TACAGCTTTGTCCTGCCCCTTTCTCACTTTCTCCACTATGGTTTTCCTCTCTTTCTCTTG
CCAGAATTTTCTAACATTTTAAAAATTCCTCTGTGTCCAGTAGTTTCAAGTCCATTAAGT
ATCTTCTCAGGATATTCTCAAATTTCAAAATAGAAAATGTTCAGCTGTGTAGTTAATTAA
ATTTAAATTTTTCTGGAACAACTGCTCAAACTATTAAATACATTTATCAAGTCTGAGAGC
ACTTCATACCTGCTTCAGTTATGGAAATTCTCTGAGAATGTTCTAGAGATAGGTAACTGA
TATCACAGTAGCTTCTAATAACAAACAAATACTTATGATTTTTCCCTTTTTTGCTCAGGG
ATGATGAGGATTTCCTCTTACCTTCTGAGGTAGAATTTTCTAAATGGGGAAAACAGGCCT
TTTAAATACTGTCACAAGGCTCTACAGTATAACCTATAACTCCTATACACACTGCAAATA
TTTCTTTAAATTGTACAGGTACATGAGCCACCTTCTTACTTCTTAAAATCTTTGGAAAGA
CCTTTAACCAGTAAGCAATTTTATAACTCAGGATCATCAAAGCTACTGTTCTGATTCCTG
ATAGAGAAAAACATCCTATTTCCTTATAACAAGGCAAGGAGAAATGCTTATTTTATTCCT
GATAATTTACAGAACTAGAATAAAGTTTTTTTCTTTCCATTTTGGACTTAAGTCTGCCAA
TTGGACTTTTGTGCATGAAATAAGTTACTTTTTATAGAGAATAAGTGCTTTTAAGTTCCT
AAAAGGCTTGTCCCTAAGTAATGATGTTGGTAATAAAAGCCTTTGAAAGGCTGAAAACCT
AAGTAGCATTTGGTACTTCTGTAGGAGTGGAGAATGGCAGCTTGTTGTTGAGAGTTGCAT
ACTGCAGCCAAGTGGTCAGCAATGAAATAAATACTTCTAGAATGTTAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               200-356, + strand, RNAz p=0.968394
               

               
               1238-1352, - strand, RNAz p=0.623251
               

               
               1739-1846, - strand, RNAz p=0.949708

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-356, + strand, RNAz p=0.968394
               

               
               1238-1352, - strand, RNAz p=0.623251
               

               
               1739-1846, - strand, RNAz p=0.949708

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               296-392, + strand, RNAmicro p=0.990561

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               296-392, + strand, RNAmicro p=0.990561

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1846, gnl|bosTau2|chr3 (18230032-18231890)
               

               
               1-1846, gnl|Hg17|chr1 (142604875-142606781)
               

               
               1-1846, gnl|Mm7|chr3 (97792503-97794566)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1846, gnl|bosTau2|chr3 (18230032-18231890)
               

               
               1-1846, gnl|Hg17|chr1 (142604875-142606781)
               

               
               1-1846, gnl|Mm7|chr3 (97792503-97794566)

Expressed library(ies): 30 entry(ies)

More info

Expressed library(ies): 30 entry(ies)

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               pro (0.512033)
               

               
               lun (0.451467)
               

               
               isp (0.451128)
               

               
               clu (0.358938)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               lun (0.451467)
               

               
               isp (0.451128)
               

               
               clu (0.358938)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	200-356, + strand, RNAz p=0.968394
	1238-1352, - strand, RNAz p=0.623251
	1739-1846, - strand, RNAz p=0.949708

	1-1846, gnl\|bosTau2\|chr3 (18230032-18231890)
	1-1846, gnl\|Hg17\|chr1 (142604875-142606781)
	1-1846, gnl\|Mm7\|chr3 (97792503-97794566)

	pro (0.512033)
	lun (0.451467)
	isp (0.451128)
	clu (0.358938)
	cte (0.29274)
	liv (0.292569)
	pla (0.267344)
	lyg (0.266205)
	ova (0.258264)
	bla (0.248694)
	cbe (0.239234)
	mas (0.210305)
	hea (0.204499)
	aor (0.195274)
	sag (0.182715)
	fco (0.157208)
	fat (0.147427)
	lin (0.145603)
	spl (0.143184)
	nca (0.136874)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	ese (0.126502)
	tra (0.123092)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)
	cty (0.10408)