Non-Coding RNA Search

Ss1.1-Pig3-SRG8012D22.5

Sequence:


               
               ACGGAGGCAGATTTCCACGTGAGCAAGAACAGGACGGTGAGGGTGCCCATGATGGGCATT
AAGGCCCTGACCGTGCCATACTTCCGGGACGAGGAGCTGGCCTGCACGGTGGTGGAGCTC
CCGTACACCAGCAACGACAGCGCGCTCTTCATCCTCCCTGACGACGGCAGGATGGCGGCC
GTGGAAGCCAAGCTGCTCCCGGAGACGCTGAGGAGGTGGAGAGACTTCCTGCAGCCCAGA
TGGATCGTTGAACTTTACTTGCCAAAGTTTTCCATCTCCAGCGACTACAGACTGCATGAG
ATCCTTCCCCAGCTGGGCATTAATGAAATCTTTGGCGACAATGCTAACCTGTCAGGAATC
ACAAATACCAAGCACTTGAAAGTTTCCCAGGTGGTCCACAGCGCTGTGCTTGACGTGAAC
GAGGAGGGCACAGAAGCGGCTGCCGCCACCGGAATCGACATTAACGTCAGGTCCCTGGAA
AGAATCGCTCTGCACTTCAACAGGCCCTTTCTGTTTGTCATAATCAGCAAAGACATCCAG
AGCGTCATCTTTCTGGGCAAAGTCACCAAGCCCTAGAGCTCCCCTCCGAGTGGCGAGACC
CTCCGAAACGAGCTGGGCACCTCATTCTGGGCACCTCACCTCTGGCTACCTGGCCCCACC
TTTCATCCTTGAGGAGGTACAGTCACCCTCTGGAGGCGCCACACGCCCAGGGAGTCTGTG
CCCTGCTCCGCGGAGGCTATGAGACCTCGCACAGCAATAAAGCTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGAGGCAGATTTCCACGTGAGCAAGAACAGGACGGTGAGGGTGCCCATGATGGGCATT
AAGGCCCTGACCGTGCCATACTTCCGGGACGAGGAGCTGGCCTGCACGGTGGTGGAGCTC
CCGTACACCAGCAACGACAGCGCGCTCTTCATCCTCCCTGACGACGGCAGGATGGCGGCC
GTGGAAGCCAAGCTGCTCCCGGAGACGCTGAGGAGGTGGAGAGACTTCCTGCAGCCCAGA
TGGATCGTTGAACTTTACTTGCCAAAGTTTTCCATCTCCAGCGACTACAGACTGCATGAG
ATCCTTCCCCAGCTGGGCATTAATGAAATCTTTGGCGACAATGCTAACCTGTCAGGAATC
ACAAATACCAAGCACTTGAAAGTTTCCCAGGTGGTCCACAGCGCTGTGCTTGACGTGAAC
GAGGAGGGCACAGAAGCGGCTGCCGCCACCGGAATCGACATTAACGTCAGGTCCCTGGAA
AGAATCGCTCTGCACTTCAACAGGCCCTTTCTGTTTGTCATAATCAGCAAAGACATCCAG
AGCGTCATCTTTCTGGGCAAAGTCACCAAGCCCTAGAGCTCCCCTCCGAGTGGCGAGACC
CTCCGAAACGAGCTGGGCACCTCATTCTGGGCACCTCACCTCTGGCTACCTGGCCCCACC
TTTCATCCTTGAGGAGGTACAGTCACCCTCTGGAGGCGCCACACGCCCAGGGAGTCTGTG
CCCTGCTCCGCGGAGGCTATGAGACCTCGCACAGCAATAAAGCTCTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9968805|emb|CAC06755.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9968805|emb|CAC06755.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-242, gnl|bosTau2|chr21 (39149914-39149680)
               

               
               5-242, gnl|Hg17|chr14 (94155324-94155561)
               

               
               5-242, gnl|Mm7|chr12 (101905488-101905725)
               


               
               388-768, gnl|bosTau2|chr21 (39147350-39146939)
               

               
               388-768, gnl|Hg17|chr14 (94159698-94160136)
               

               
               388-768, gnl|Mm7|chr12 (101907731-101908141)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-242, gnl|bosTau2|chr21 (39149914-39149680)
               

               
               5-242, gnl|Hg17|chr14 (94155324-94155561)
               

               
               5-242, gnl|Mm7|chr12 (101905488-101905725)
               


               
               388-768, gnl|bosTau2|chr21 (39147350-39146939)
               

               
               388-768, gnl|Hg17|chr14 (94159698-94160136)
               

               
               388-768, gnl|Mm7|chr12 (101907731-101908141)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eli (0.151814)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)
               

               
               ute (0.132784)

	5-242, gnl\|bosTau2\|chr21 (39149914-39149680)
	5-242, gnl\|Hg17\|chr14 (94155324-94155561)
	5-242, gnl\|Mm7\|chr12 (101905488-101905725)

	388-768, gnl\|bosTau2\|chr21 (39147350-39146939)
	388-768, gnl\|Hg17\|chr14 (94159698-94160136)
	388-768, gnl\|Mm7\|chr12 (101907731-101908141)