Ss1.1-Pig3-SRG8012G01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAAAATGTAAAGATATCATCAAAACAGCTCGTAGTTTGCTAAACGACGTGCAGTTTGG CCAGTTTGGAGATGACCCAAAGGAGGAAGTAATGGTTCTAGAGAGGATCCTGCTACAGAC CATCAAGTTCGATTTACAGGTGGAGCATCCGTACCAGTTTCTACTCAAGTATGCGAAACA GCTCAAAGGTGATAAAAACAAAATTCAAAAGTTGGTTCAAATGGCATGGACATTTGTAAA TGACAGTCTCTGCACGACGTTGTCACTACAGTGGGAACCAGAGATCATAGCAGTGGCAGT GATGTATCTTGCGGGACGTTTGTGCAAATTTGAAATACAAGAGTGGACCTCCAAACCCAT GTATAGGAGATGGTGGGAGCAGTTTGTGCAGGACGTCCCTGTGGACGTTCTGGAAGACAT CTGCCACCAAATCCTGGACCTTTACTCCCAAGGAAAACAACAGATGCCTCATCACACGCC CCATCAGCTGCAGCAGCCCCCGTCTCTCCATCCTGCACCACAAGTGCCACAAGTGCCACA GTCCCAGTCGTCTCAAGGCTCCGAAGCGCCGGCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAAAATGTAAAGATATCATCAAAACAGCTCGTAGTTTGCTAAACGACGTGCAGTTTGG CCAGTTTGGAGATGACCCAAAGGAGGAAGTAATGGTTCTAGAGAGGATCCTGCTACAGAC CATCAAGTTCGATTTACAGGTGGAGCATCCGTACCAGTTTCTACTCAAGTATGCGAAACA GCTCAAAGGTGATAAAAACAAAATTCAAAAGTTGGTTCAAATGGCATGGACATTTGTAAA TGACAGTCTCTGCACGACGTTGTCACTACAGTGGGAACCAGAGATCATAGCAGTGGCAGT GATGTATCTTGCGGGACGTTTGTGCAAATTTGAAATACAAGAGTGGACCTCCAAACCCAT GTATAGGAGATGGTGGGAGCAGTTTGTGCAGGACGTCCCTGTGGACGTTCTGGAAGACAT CTGCCACCAAATCCTGGACCTTTACTCCCAAGGAAAACAACAGATGCCTCATCACACGCC CCATCAGCTGCAGCAGCCCCCGTCTCTCCATCCTGCACCACAAGTGCCACAAGTGCCACA GTCCCAGTCGTCTCAAGGCTCCGAAGCGCCGGCCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 299-416, + strand, RNAz p=0.658137 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 299-416, + strand, RNAz p=0.658137 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 81-199, gnl|bosTau2|chr7 (31768028-31767910) | |
| 81-199, gnl|canFam2|chr8 (70955495-70955625) | |
| 81-199, gnl|danRer3|chr14 (32311779-32311647) | |
| 81-199, gnl|dasNov1|scaffold_1722 (45028-44917) | |
| 81-199, gnl|echTel1|scaffold_272044 (8091-8215) | |
| 81-199, gnl|fr1|chrUn (12537030-12537174) | |
| 81-199, gnl|galGal2|chr5 (44814297-44814423) | |
| 81-199, gnl|hg17|chr14 (99036840-99036969) | |
| 81-199, gnl|Hg17|chr14 (99036854-99036986) | |
| 81-199, gnl|loxAfr1|scaffold_61948 (955-1092) | |
| 81-199, gnl|mm7|chr12 (105714835-105714960) | |
| 81-199, gnl|Mm7|chr12 (105714845-105715019) | |
| 81-199, gnl|monDom2|scaffold_6 (80445944-80446077) | |
| 81-199, gnl|oryCun1|scaffold_210771 (107442-107571) | |
| 81-199, gnl|panTro1|chr15 (99534862-99534991) | |
| 81-199, gnl|rheMac2|chr7 (162764210-162764339) | |
| 81-199, gnl|rn3|chr6 (132566403-132566528) | |
| 81-199, gnl|tetNig1|chr14 (8140058-8140197) | |
| 81-199, gnl|xenTro1|scaffold_588 (479374-479496) | |
| 245-416, gnl|bosTau2|chr7 (31766631-31766460) | |
| 245-416, gnl|canFam2|chr8 (70957311-70957451) | |
| 245-416, gnl|danRer3|chr14 (32304924-32304784) | |
| 245-416, gnl|dasNov1|scaffold_4890 (96535-96675) | |
| 245-416, gnl|echTel1|scaffold_246214 (620-760) | |
| 245-416, gnl|fr1|chrUn (12537533-12537673) | |
| 245-416, gnl|galGal2|chr5 (44816019-44816159) | |
| 245-416, gnl|hg17|chr14 (99038296-99038436) | |
| 245-416, gnl|Hg17|chr14 (99038295-99038466) | |
| 245-416, gnl|mm7|chr12 (105716241-105716381) | |
| 245-416, gnl|Mm7|chr12 (105716240-105716411) | |
| 245-416, gnl|monDom2|scaffold_6 (80450217-80450357) | |
| 245-416, gnl|oryCun1|scaffold_106569 (11181-11291) | |
| 245-416, gnl|panTro1|chr15 (99536321-99536461) | |
| 245-416, gnl|rheMac2|chr7 (162765663-162765803) | |
| 245-416, gnl|rn3|chr6 (132567893-132568033) | |
| 245-416, gnl|tetNig1|chr14 (8140568-8140708) | |
| 245-416, gnl|xenTro1|scaffold_588 (481933-482073) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 81-199, gnl|bosTau2|chr7 (31768028-31767910) | |
| 81-199, gnl|canFam2|chr8 (70955495-70955625) | |
| 81-199, gnl|danRer3|chr14 (32311779-32311647) | |
| 81-199, gnl|dasNov1|scaffold_1722 (45028-44917) | |
| 81-199, gnl|echTel1|scaffold_272044 (8091-8215) | |
| 81-199, gnl|fr1|chrUn (12537030-12537174) | |
| 81-199, gnl|galGal2|chr5 (44814297-44814423) | |
| 81-199, gnl|hg17|chr14 (99036840-99036969) | |
| 81-199, gnl|Hg17|chr14 (99036854-99036986) | |
| 81-199, gnl|loxAfr1|scaffold_61948 (955-1092) | |
| 81-199, gnl|mm7|chr12 (105714835-105714960) | |
| 81-199, gnl|Mm7|chr12 (105714845-105715019) | |
| 81-199, gnl|monDom2|scaffold_6 (80445944-80446077) | |
| 81-199, gnl|oryCun1|scaffold_210771 (107442-107571) | |
| 81-199, gnl|panTro1|chr15 (99534862-99534991) | |
| 81-199, gnl|rheMac2|chr7 (162764210-162764339) | |
| 81-199, gnl|rn3|chr6 (132566403-132566528) | |
| 81-199, gnl|tetNig1|chr14 (8140058-8140197) | |
| 81-199, gnl|xenTro1|scaffold_588 (479374-479496) | |
| 245-416, gnl|bosTau2|chr7 (31766631-31766460) | |
| 245-416, gnl|canFam2|chr8 (70957311-70957451) | |
| 245-416, gnl|danRer3|chr14 (32304924-32304784) | |
| 245-416, gnl|dasNov1|scaffold_4890 (96535-96675) | |
| 245-416, gnl|echTel1|scaffold_246214 (620-760) | |
| 245-416, gnl|fr1|chrUn (12537533-12537673) | |
| 245-416, gnl|galGal2|chr5 (44816019-44816159) | |
| 245-416, gnl|hg17|chr14 (99038296-99038436) | |
| 245-416, gnl|Hg17|chr14 (99038295-99038466) | |
| 245-416, gnl|mm7|chr12 (105716241-105716381) | |
| 245-416, gnl|Mm7|chr12 (105716240-105716411) | |
| 245-416, gnl|monDom2|scaffold_6 (80450217-80450357) | |
| 245-416, gnl|oryCun1|scaffold_106569 (11181-11291) | |
| 245-416, gnl|panTro1|chr15 (99536321-99536461) | |
| 245-416, gnl|rheMac2|chr7 (162765663-162765803) | |
| 245-416, gnl|rn3|chr6 (132567893-132568033) | |
| 245-416, gnl|tetNig1|chr14 (8140568-8140708) | |
| 245-416, gnl|xenTro1|scaffold_588 (481933-482073) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| eep (0.122564) |