Ss1.1-Pig3-SRG8012H14.5
|
TCTGGAGCAAAAGCCTCCGAATACGATTCCAAAGTCAGCAGAGACGTTGCGCCGGGAGAG
GCCCAAGTCAGATCTGCCTCCAAAGCTGCTTCCACTAAATATATCCCAAGCCCTGGAAAT
GGCACTGGAACAGAAGGAATTAGACCAAGAACCTGGAGCAGGACTTGACAGTAGTCTGAT
CCAGACTGGTGCCAGCTGCCAGAACCCAGGATGTGATGCTGTTTACCAAGGCTCGGAGAG
TGATGCTACTCCCTGTACCTACCACCCAGGAGCACCTCGATTCCATGAGGGGATGAAGTC
TTGGAGCTGTTGTGGCATCCAGACCCTGGATTTTGGGGTATTTCTGGCACAGCCAGGATG
CAGAGTTGGTAGACATGACTGGGGGAAGAAGCTGCTGGCATCTTGCCGTCACGATTGGCA
CCAGACAGATTCCTTAGTAGTGGTGACTGTATACGGCCAGATTCCACTTCCTGCGTTCAA
TTGGGTGAAGGCCAGTCAAACTGAGCTTCATATCCACATTGTCTTTGATGGGAACCGTGT
GTTCCAAGCACAGATGAAGCTCTGGGGGGTTGTAAACGTGGAGCAGAGCTCTGTCTCCTT
GATGCCATCTCGGGTTGAAATCTCCCTGGTCAAGGCTGACCCAGGATTCTGGGCCCAGCT
GGAGCACCCCGATGCACTGGCTGAGAAGTCTAAGTCAGGGGTTGGGTTAGAGATGGATGA
GGAAGAATCTGAGGATTCAGATGATGATCTGAGCTGGACAGAGGAGGAGGAGGAAGCGAT
GGGGGAATAGTGACACCAGACAACTAAGTGTCTAGATAGGACCTCAGTGACTCCCTTAGA
ATCTCAAAGACCAGGATATGGTTGACCATGTGGTGTCATTGAACAGCAGGAGGCAGAAGG
CGAGGAGAACAAAAGTGTCCAAACCATCCTGTTTTTTTTTCCTTTAAATAAATCTTGTAT
TTCTGCAGTTTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCTGGAGCAAAAGCCTCCGAATACGATTCCAAAGTCAGCAGAGACGTTGCGCCGGGAGAG
GCCCAAGTCAGATCTGCCTCCAAAGCTGCTTCCACTAAATATATCCCAAGCCCTGGAAAT
GGCACTGGAACAGAAGGAATTAGACCAAGAACCTGGAGCAGGACTTGACAGTAGTCTGAT
CCAGACTGGTGCCAGCTGCCAGAACCCAGGATGTGATGCTGTTTACCAAGGCTCGGAGAG
TGATGCTACTCCCTGTACCTACCACCCAGGAGCACCTCGATTCCATGAGGGGATGAAGTC
TTGGAGCTGTTGTGGCATCCAGACCCTGGATTTTGGGGTATTTCTGGCACAGCCAGGATG
CAGAGTTGGTAGACATGACTGGGGGAAGAAGCTGCTGGCATCTTGCCGTCACGATTGGCA
CCAGACAGATTCCTTAGTAGTGGTGACTGTATACGGCCAGATTCCACTTCCTGCGTTCAA
TTGGGTGAAGGCCAGTCAAACTGAGCTTCATATCCACATTGTCTTTGATGGGAACCGTGT
GTTCCAAGCACAGATGAAGCTCTGGGGGGTTGTAAACGTGGAGCAGAGCTCTGTCTCCTT
GATGCCATCTCGGGTTGAAATCTCCCTGGTCAAGGCTGACCCAGGATTCTGGGCCCAGCT
GGAGCACCCCGATGCACTGGCTGAGAAGTCTAAGTCAGGGGTTGGGTTAGAGATGGATGA
GGAAGAATCTGAGGATTCAGATGATGATCTGAGCTGGACAGAGGAGGAGGAGGAAGCGAT
GGGGGAATAGTGACACCAGACAACTAAGTGTCTAGATAGGACCTCAGTGACTCCCTTAGA
ATCTCAAAGACCAGGATATGGTTGACCATGTGGTGTCATTGAACAGCAGGAGGCAGAAGG
CGAGGAGAACAAAAGTGTCCAAACCATCCTGTTTTTTTTTCCTTTAAATAAATCTTGTAT
TTCTGCAGTTTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
62-162, gnl|bosTau2|chrX (22098953-22099053) |
|
62-162, gnl|canFam2|chrX (58560796-58560904) |
|
62-162, gnl|dasNov1|scaffold_242985 (302-194) |
|
62-162, gnl|echTel1|scaffold_317837 (43667-43775) |
|
62-162, gnl|hg17|chrX (70306124-70306232) |
|
62-162, gnl|Hg17|chrX (70306128-70306228) |
|
62-162, gnl|mm7|chrX (96778933-96779041) |
|
62-162, gnl|Mm7|chrX (96778937-96779037) |
|
62-162, gnl|monDom2|scaffold_188 (78874-78991) |
|
62-162, gnl|panTro1|chrX (72503962-72504070) |
|
62-162, gnl|rheMac2|chrX (70201033-70201141) |
|
62-162, gnl|rn3|chrX (89596688-89596796) |
| |
|
390-505, gnl|bosTau2|chrX (22099898-22100013) |
|
390-505, gnl|Hg17|chrX (70307056-70307171) |
|
390-505, gnl|Mm7|chrX (96779827-96779942) |
| |
|
568-972, gnl|bosTau2|chrX (22100675-22101076) |
|
568-972, gnl|Hg17|chrX (70307835-70308241) |
|
568-972, gnl|Mm7|chrX (96780486-96780895) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
62-162, gnl|bosTau2|chrX (22098953-22099053) |
|
62-162, gnl|canFam2|chrX (58560796-58560904) |
|
62-162, gnl|dasNov1|scaffold_242985 (302-194) |
|
62-162, gnl|echTel1|scaffold_317837 (43667-43775) |
|
62-162, gnl|hg17|chrX (70306124-70306232) |
|
62-162, gnl|Hg17|chrX (70306128-70306228) |
|
62-162, gnl|mm7|chrX (96778933-96779041) |
|
62-162, gnl|Mm7|chrX (96778937-96779037) |
|
62-162, gnl|monDom2|scaffold_188 (78874-78991) |
|
62-162, gnl|panTro1|chrX (72503962-72504070) |
|
62-162, gnl|rheMac2|chrX (70201033-70201141) |
|
62-162, gnl|rn3|chrX (89596688-89596796) |
| |
|
390-505, gnl|bosTau2|chrX (22099898-22100013) |
|
390-505, gnl|Hg17|chrX (70307056-70307171) |
|
390-505, gnl|Mm7|chrX (96779827-96779942) |
| |
|
568-972, gnl|bosTau2|chrX (22100675-22101076) |
|
568-972, gnl|Hg17|chrX (70307835-70308241) |
|
568-972, gnl|Mm7|chrX (96780486-96780895) |
|
hlv (0.557025) |
|
che (0.545256) |
|
ldo (0.291008) |
|
mas (0.210305) |
|
hea (0.204499) |
|
aor (0.195274) |
|
gul (0.177588) |
|
cut (0.169924) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
jca (0.11396) |
|
hlv (0.557025) |
|
che (0.545256) |
|
ldo (0.291008) |
|
mas (0.210305) |
|
hea (0.204499) |
|
aor (0.195274) |
|
gul (0.177588) |
|
cut (0.169924) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
jca (0.11396) |
