Non-Coding RNA Search

Ss1.1-Pig3-SRG8012H17.5

Sequence:


               
               TAGGAGGAGGAGGAGGAGGAGGTGACACTGATGATAAAAACCCGTTCAAGAATTTAGATG
TGACATCTGCAGCAGGTTCAGATCTCTCAGCTAAAAGACAGACTGGATACTTCGTAAAGA
TTTTCATCTGTTGTGCACAGAGAGCCAAAATCCGTTACTGAAATAGACTGTCTGGGTGAA
CTGCCTGCTGGGTCCAGTGATGCACTAGTAGACAAAGAAGTTGAAAAAGAAGGCTGGCAT
ATTCTTTGGATAACTGGCTGAGTGTGACACCAATATGGCATCAAGCCCTACTATGATTCC
AAGGACTTCATGATTAAATAACTGATTTTTTTGGGTGGAAGTAGGGGTGGATGAAGTAAA
TTTGATCTTTACTTGGGGAATGTATAATGTATTACCATCCCATAATGATGTATGATAATT
GGCTTTGGTCATCAAACTTTAGAGATCCTGTCTATTTATGGGACTTAATATAGTTAACAC
CTTTTAGTATTGAACTTTCTGACACTAAGGGAAATGCTATAAAGAGAAATATCTGCTTAA
CCTAAAATAGTTTACCTAAAAAGTTTAATATAAGGACTGTGATTTTTCTTTGGGGGATTT
TTGAAATTTTGCTCCTCCCTAGAGTATTTAAATTATATTTCTATTTGCAGAAAGGCTACT
GTACCTAGAGTTTTTTAGGAAAATATCCTTTTGTGTAGGATCTTGAACTGGATAGTGAGT
AGATAATCATACTGTACAGTGTTAATGTGCATACAACAGTTAATAAATTTATAACTACAA
ATTAATAAGAGCTATTAATAAATTAATATCCAGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGAGGAGGAGGAGGAGGAGGTGACACTGATGATAAAAACCCGTTCAAGAATTTAGATG
TGACATCTGCAGCAGGTTCAGATCTCTCAGCTAAAAGACAGACTGGATACTTCGTAAAGA
TTTTCATCTGTTGTGCACAGAGAGCCAAAATCCGTTACTGAAATAGACTGTCTGGGTGAA
CTGCCTGCTGGGTCCAGTGATGCACTAGTAGACAAAGAAGTTGAAAAAGAAGGCTGGCAT
ATTCTTTGGATAACTGGCTGAGTGTGACACCAATATGGCATCAAGCCCTACTATGATTCC
AAGGACTTCATGATTAAATAACTGATTTTTTTGGGTGGAAGTAGGGGTGGATGAAGTAAA
TTTGATCTTTACTTGGGGAATGTATAATGTATTACCATCCCATAATGATGTATGATAATT
GGCTTTGGTCATCAAACTTTAGAGATCCTGTCTATTTATGGGACTTAATATAGTTAACAC
CTTTTAGTATTGAACTTTCTGACACTAAGGGAAATGCTATAAAGAGAAATATCTGCTTAA
CCTAAAATAGTTTACCTAAAAAGTTTAATATAAGGACTGTGATTTTTCTTTGGGGGATTT
TTGAAATTTTGCTCCTCCCTAGAGTATTTAAATTATATTTCTATTTGCAGAAAGGCTACT
GTACCTAGAGTTTTTTAGGAAAATATCCTTTTGTGTAGGATCTTGAACTGGATAGTGAGT
AGATAATCATACTGTACAGTGTTAATGTGCATACAACAGTTAATAAATTTATAACTACAA
ATTAATAAGAGCTATTAATAAATTAATATCCAGATC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               20-553, gnl|bosTau2|chr2 (35422935-35422416)
               

               
               20-553, gnl|Hg17|chr2 (144911169-144910648)
               

               
               20-553, gnl|Mm7|chr2 (44923772-44923246)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-553, gnl|bosTau2|chr2 (35422935-35422416)
               

               
               20-553, gnl|Hg17|chr2 (144911169-144910648)
               

               
               20-553, gnl|Mm7|chr2 (44923772-44923246)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               nms (0.427716)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

	20-553, gnl\|bosTau2\|chr2 (35422935-35422416)
	20-553, gnl\|Hg17\|chr2 (144911169-144910648)
	20-553, gnl\|Mm7\|chr2 (44923772-44923246)

	nms (0.427716)
	tbr (0.154178)
	spl (0.143184)
	hlv (0.139256)
	ste (0.135208)
	kid (0.129735)
	tra (0.123092)