Non-Coding RNA Search

Ss1.1-Pig3-SRG8012I04.3

Sequence:


               
               TTATTCCAATTGTTATGGGAATGATATTTACCCTGTTTACTATCAATGTGAGCACGGACA
TGCGGCATCATCGAGTAAGACTGGTGTTCCAAGATTCTCCTGTCCACGGTGGTCGGAAAC
TGCGTAGTGAACAGGGTGTGCAAGTCATCCTGGACCCAGTGCACAGCGTTCGACTTTTTG
ACTGGTGGCATCCTCAGTATCCGTTCTCCCTGAGAGCATAGCTATTGCTTCCTGTCACTG
AGGGCAGCCCTGAGCTAGGTCAGGCAACTTGTAATCAGAGTCCACCTTGAAAGTGGCAGC
TGGATTGTATATCTGGTCGGTAATGCACATGCTCTTCAGGTTTCTGGGGCTCCTGCTAGG
GAAGGAGAAGGATTGAATCAGTAAGAAAAACAGCTATAATTTACAAACATATTTTAATGT
AAAATTTTGCATTTGAAAGGAAAAACCTGACCCTGTTTTCTGTGTTAAATCCCATTTGGT
GCTACTGAGTTTGTTGTTCTTTATTCTTTTATCCCAGCAAAAATGGATGATCTCGCTTTA
GGGAAAAATTAAACTCTTAAATCTCCAAACAAGGAAATTCCATCATTCCCTTACGAATCA
GAGGAATCTTAGAGGCCTAAAATTGTTGCCATGTTGCTTCCAATTTAGCTGTCCCTCAAA
TTCGGTGAATATTTTCTCTTCTCTCTTTACCCTCCTCCAGAAATAAAGCAGGTGACAGGG
GTTTTCAGAATACATGAGATTGACTTGTGTATCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTCCAATTGTTATGGGAATGATATTTACCCTGTTTACTATCAATGTGAGCACGGACA
TGCGGCATCATCGAGTAAGACTGGTGTTCCAAGATTCTCCTGTCCACGGTGGTCGGAAAC
TGCGTAGTGAACAGGGTGTGCAAGTCATCCTGGACCCAGTGCACAGCGTTCGACTTTTTG
ACTGGTGGCATCCTCAGTATCCGTTCTCCCTGAGAGCATAGCTATTGCTTCCTGTCACTG
AGGGCAGCCCTGAGCTAGGTCAGGCAACTTGTAATCAGAGTCCACCTTGAAAGTGGCAGC
TGGATTGTATATCTGGTCGGTAATGCACATGCTCTTCAGGTTTCTGGGGCTCCTGCTAGG
GAAGGAGAAGGATTGAATCAGTAAGAAAAACAGCTATAATTTACAAACATATTTTAATGT
AAAATTTTGCATTTGAAAGGAAAAACCTGACCCTGTTTTCTGTGTTAAATCCCATTTGGT
GCTACTGAGTTTGTTGTTCTTTATTCTTTTATCCCAGCAAAAATGGATGATCTCGCTTTA
GGGAAAAATTAAACTCTTAAATCTCCAAACAAGGAAATTCCATCATTCCCTTACGAATCA
GAGGAATCTTAGAGGCCTAAAATTGTTGCCATGTTGCTTCCAATTTAGCTGTCCCTCAAA
TTCGGTGAATATTTTCTCTTCTCTCTTTACCCTCCTCCAGAAATAAAGCAGGTGACAGGG
GTTTTCAGAATACATGAGATTGACTTGTGTATCTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12850106|dbj|BAB28593.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12850106|dbj|BAB28593.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               31-756, gnl|bosTau2|chr16 (61796-62521)
               

               
               31-756, gnl|Hg17|chr1 (199723635-199724347)
               

               
               31-756, gnl|Mm7|chr1 (134237984-134237284)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-756, gnl|bosTau2|chr16 (61796-62521)
               

               
               31-756, gnl|Hg17|chr1 (199723635-199724347)
               

               
               31-756, gnl|Mm7|chr1 (134237984-134237284)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               amn (0.417711)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               thg (0.126791)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               thg (0.126791)
               

               
               cty (0.10408)

	31-756, gnl\|bosTau2\|chr16 (61796-62521)
	31-756, gnl\|Hg17\|chr1 (199723635-199724347)
	31-756, gnl\|Mm7\|chr1 (134237984-134237284)

	amn (0.417711)
	ill (0.175593)
	fhi (0.169578)
	bfe (0.149858)
	ssp (0.13552)
	thg (0.126791)
	cty (0.10408)