Ss1.1-Pig3-SRG8012I12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTGGGTTTGTTCGGCTTCACGTTTGCTGTGGTTGCAGGTACCAAGATGGAGTTTTTTG GAGGAAAGCGGAGGAAACTGAGGTTGGCAGATGACCAAAGGAATGCTTGCTATCCACATA GCCTTCAGTTTTATTTGCAACCACCTTCTGAAAACATATCTTTGACAGAGTTTGAAAACT TGGCTTTTGAGAGACTTAAGTTGCTAAAATCAGTTGAGAATCTTGGTGTGAGCTATGTGA AAGGAACCGAGCAGTACCAGAGCAAGCTGGAGGCTGAGCTTCGGAAGCTCAAGTTTTCCT ACAGAGAAAACTTGGAAGATGAGTATGAGCCACGAAGAAGAGATCACATCTCGCACTTTA TTCTGCGCCTTGCTTACTGCCAGTCTGAAGATCTTAGGCGCTGGTTCATTCAACAAGAAA TGGATCTCCTTCGATTTCGATTCCATATTTTACCCAAGGACAAAGTTCAGAGTTTCTTAA AGGACAGCCATTTGCAGTTTGAGGCTATAAGTGATGAAGAGAAGACTCTCCGAGAACAGG ACATCATTGCTTCGTCTCCCAGTTTAAGTGGGACTCAGTTGGAGTTGGAGTCGGTTTATA AGATCCCTTTTGCTGATGCTTTGGATTTGTTTCGAGGAAGGAGAGTCTATTTGGAAGATG GCTTTGCTTATGTACCACTCAAAGACATTGTGGCAATCATCCTGAATGAATTTAGAACCA AACTATCCAAGGCTTTGGCTTTGACAGCCAGGTCCTTGCCTGCCGTGCAGTCGGACGAGA GACTCCAGCCTCTGCTCAACCACCTCAGTCATTCCTACACTGGTCAGGACTACAGTGCAC AGGGAAATGCTGGGAAGATTTCTTTGGATCAGATCGATTCTCTCTCTACCAAATCCTTCC CGCCTTGCATGCGTCAGTTACACAGAGCCCTGCGGGAAAATCACCATCTTCGTCATGGGG GCCGCATGCAGTATGGGCTCTTCCTGAAGGGCATTGGTTTGACCTTGGAACAGGCGTTAC AGTTCTGGAAGCAAGAATTTATCAAAGGAAAGATGGATCCAGACAAGTTTGATAAAGGCT ACTCTTACAATATCCGTCATAGCTTCGGAAAGGAAGGCAAGAGAACAGACTATACGCCTT ATAGTTGCATGAAGATTATCCTCACCAATCCACCAAGCCAAGGGGATTATCATGGGTGTC CATTCCGCCACAGTGACCCCGAGCTACTGAGGCAGAAGCTGCAGGCCTATAAGATCTCCC CCACCGGGATCGCCCAGATTTTGGATTTAGTGAAAGGCACACATTACCAGGTAGCCTGTC AGAAGTACTTTGAGGTGACACATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTGGGTTTGTTCGGCTTCACGTTTGCTGTGGTTGCAGGTACCAAGATGGAGTTTTTTG GAGGAAAGCGGAGGAAACTGAGGTTGGCAGATGACCAAAGGAATGCTTGCTATCCACATA GCCTTCAGTTTTATTTGCAACCACCTTCTGAAAACATATCTTTGACAGAGTTTGAAAACT TGGCTTTTGAGAGACTTAAGTTGCTAAAATCAGTTGAGAATCTTGGTGTGAGCTATGTGA AAGGAACCGAGCAGTACCAGAGCAAGCTGGAGGCTGAGCTTCGGAAGCTCAAGTTTTCCT ACAGAGAAAACTTGGAAGATGAGTATGAGCCACGAAGAAGAGATCACATCTCGCACTTTA TTCTGCGCCTTGCTTACTGCCAGTCTGAAGATCTTAGGCGCTGGTTCATTCAACAAGAAA TGGATCTCCTTCGATTTCGATTCCATATTTTACCCAAGGACAAAGTTCAGAGTTTCTTAA AGGACAGCCATTTGCAGTTTGAGGCTATAAGTGATGAAGAGAAGACTCTCCGAGAACAGG ACATCATTGCTTCGTCTCCCAGTTTAAGTGGGACTCAGTTGGAGTTGGAGTCGGTTTATA AGATCCCTTTTGCTGATGCTTTGGATTTGTTTCGAGGAAGGAGAGTCTATTTGGAAGATG GCTTTGCTTATGTACCACTCAAAGACATTGTGGCAATCATCCTGAATGAATTTAGAACCA AACTATCCAAGGCTTTGGCTTTGACAGCCAGGTCCTTGCCTGCCGTGCAGTCGGACGAGA GACTCCAGCCTCTGCTCAACCACCTCAGTCATTCCTACACTGGTCAGGACTACAGTGCAC AGGGAAATGCTGGGAAGATTTCTTTGGATCAGATCGATTCTCTCTCTACCAAATCCTTCC CGCCTTGCATGCGTCAGTTACACAGAGCCCTGCGGGAAAATCACCATCTTCGTCATGGGG GCCGCATGCAGTATGGGCTCTTCCTGAAGGGCATTGGTTTGACCTTGGAACAGGCGTTAC AGTTCTGGAAGCAAGAATTTATCAAAGGAAAGATGGATCCAGACAAGTTTGATAAAGGCT ACTCTTACAATATCCGTCATAGCTTCGGAAAGGAAGGCAAGAGAACAGACTATACGCCTT ATAGTTGCATGAAGATTATCCTCACCAATCCACCAAGCCAAGGGGATTATCATGGGTGTC CATTCCGCCACAGTGACCCCGAGCTACTGAGGCAGAAGCTGCAGGCCTATAAGATCTCCC CCACCGGGATCGCCCAGATTTTGGATTTAGTGAAAGGCACACATTACCAGGTAGCCTGTC AGAAGTACTTTGAGGTGACACATA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 26-199, gnl|bosTau2|chr23 (2420658-2420831) | |
| 26-199, gnl|Hg17|chr6 (57291180-57291354) | |
| 26-199, gnl|Mm7|chr1 (33892081-33891920) | |
| 202-309, gnl|bosTau2|chr23 (2423901-2424008) | |
| 202-309, gnl|Hg17|chr6 (57293214-57293321) | |
| 202-309, gnl|Mm7|chr1 (33890208-33890101) | |
| 386-512, gnl|bosTau2|chr23 (2428113-2428239) | |
| 386-512, gnl|canFam2|chr12 (27512888-27513074) | |
| 386-512, gnl|danRer3|chr13 (27308689-27308490) | |
| 386-512, gnl|dasNov1|scaffold_38253 (41492-41682) | |
| 386-512, gnl|echTel1|scaffold_82754 (7906-8103) | |
| 386-512, gnl|hg17|chr6 (57298658-57298852) | |
| 386-512, gnl|Hg17|chr6 (57298682-57298808) | |
| 386-512, gnl|loxAfr1|scaffold_13861 (47378-47574) | |
| 386-512, gnl|mm7|chr1 (33885451-33885243) | |
| 386-512, gnl|Mm7|chr1 (33885426-33885300) | |
| 386-512, gnl|monDom2|scaffold_0 (177901968-177901777) | |
| 386-512, gnl|panTro1|chr5 (58554316-58554510) | |
| 386-512, gnl|rheMac2|chr4 (56943434-56943628) | |
| 386-512, gnl|rn3|chr9 (32409112-32408951) | |
| 386-512, gnl|tetNig1|chr17 (4279932-4279760) | |
| 601-740, gnl|bosTau2|chr23 (2359385-2359246) | |
| 601-740, gnl|canFam2|chr12 (27570797-27571015) | |
| 601-740, gnl|danRer3|chr13 (27305929-27305722) | |
| 601-740, gnl|dasNov1|scaffold_95751 (38063-37851) | |
| 601-740, gnl|echTel1|scaffold_184853 (2415-2613) | |
| 601-740, gnl|fr1|chrUn (83431049-83431258) | |
| 601-740, gnl|hg17|chr6 (57354787-57354999) | |
| 601-740, gnl|Hg17|chr6 (57354786-57354925) | |
| 601-740, gnl|loxAfr1|scaffold_35518 (4781-4989) | |
| 601-740, gnl|mm7|chr1 (33851595-33851395) | |
| 601-740, gnl|Mm7|chr1 (33851594-33851455) | |
| 601-740, gnl|monDom2|scaffold_0 (177851268-177851051) | |
| 601-740, gnl|oryCun1|scaffold_79178 (640-429) | |
| 601-740, gnl|panTro1|chr5_random (31866820-31867032) | |
| 601-740, gnl|rheMac2|chr4 (56993909-56994121) | |
| 601-740, gnl|rn3|chr9 (32376224-32376028) | |
| 601-740, gnl|tetNig1|chr17 (4278378-4278188) | |
| 601-740, gnl|xenTro1|scaffold_192 (77790-78020) | |
| 882-1067, gnl|bosTau2|chr23 (2985637-2985452) | |
| 882-1067, gnl|canFam2|chr12 (27710418-27710584) | |
| 882-1067, gnl|danRer3|chr13 (27208966-27208796) | |
| 882-1067, gnl|echTel1|scaffold_297013 (33034-33206) | |
| 882-1067, gnl|fr1|chrUn (83433368-83433537) | |
| 882-1067, gnl|galGal2|chr3 (84984427-84984263) | |
| 882-1067, gnl|hg17|chr6 (57506071-57506240) | |
| 882-1067, gnl|Hg17|chr6 (57506091-57506276) | |
| 882-1067, gnl|loxAfr1|scaffold_41107 (3631-3443) | |
| 882-1067, gnl|mm7|chr1 (33735282-33735114) | |
| 882-1067, gnl|Mm7|chr1 (33735261-33735076) | |
| 882-1067, gnl|monDom2|scaffold_0 (177648437-177648273) | |
| 882-1067, gnl|oryCun1|scaffold_175838 (107638-107470) | |
| 882-1067, gnl|panTro1|chr5 (58813874-58814043) | |
| 882-1067, gnl|rheMac2|chr4 (57135126-57135295) | |
| 882-1067, gnl|rn3|chr9 (32265673-32265504) | |
| 882-1067, gnl|tetNig1|chr17 (4275912-4275762) | |
| 882-1067, gnl|xenTro1|scaffold_192 (95297-95469) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 26-199, gnl|bosTau2|chr23 (2420658-2420831) | |
| 26-199, gnl|Hg17|chr6 (57291180-57291354) | |
| 26-199, gnl|Mm7|chr1 (33892081-33891920) | |
| 202-309, gnl|bosTau2|chr23 (2423901-2424008) | |
| 202-309, gnl|Hg17|chr6 (57293214-57293321) | |
| 202-309, gnl|Mm7|chr1 (33890208-33890101) | |
| 386-512, gnl|bosTau2|chr23 (2428113-2428239) | |
| 386-512, gnl|canFam2|chr12 (27512888-27513074) | |
| 386-512, gnl|danRer3|chr13 (27308689-27308490) | |
| 386-512, gnl|dasNov1|scaffold_38253 (41492-41682) | |
| 386-512, gnl|echTel1|scaffold_82754 (7906-8103) | |
| 386-512, gnl|hg17|chr6 (57298658-57298852) | |
| 386-512, gnl|Hg17|chr6 (57298682-57298808) | |
| 386-512, gnl|loxAfr1|scaffold_13861 (47378-47574) | |
| 386-512, gnl|mm7|chr1 (33885451-33885243) | |
| 386-512, gnl|Mm7|chr1 (33885426-33885300) | |
| 386-512, gnl|monDom2|scaffold_0 (177901968-177901777) | |
| 386-512, gnl|panTro1|chr5 (58554316-58554510) | |
| 386-512, gnl|rheMac2|chr4 (56943434-56943628) | |
| 386-512, gnl|rn3|chr9 (32409112-32408951) | |
| 386-512, gnl|tetNig1|chr17 (4279932-4279760) | |
| 601-740, gnl|bosTau2|chr23 (2359385-2359246) | |
| 601-740, gnl|canFam2|chr12 (27570797-27571015) | |
| 601-740, gnl|danRer3|chr13 (27305929-27305722) | |
| 601-740, gnl|dasNov1|scaffold_95751 (38063-37851) | |
| 601-740, gnl|echTel1|scaffold_184853 (2415-2613) | |
| 601-740, gnl|fr1|chrUn (83431049-83431258) | |
| 601-740, gnl|hg17|chr6 (57354787-57354999) | |
| 601-740, gnl|Hg17|chr6 (57354786-57354925) | |
| 601-740, gnl|loxAfr1|scaffold_35518 (4781-4989) | |
| 601-740, gnl|mm7|chr1 (33851595-33851395) | |
| 601-740, gnl|Mm7|chr1 (33851594-33851455) | |
| 601-740, gnl|monDom2|scaffold_0 (177851268-177851051) | |
| 601-740, gnl|oryCun1|scaffold_79178 (640-429) | |
| 601-740, gnl|panTro1|chr5_random (31866820-31867032) | |
| 601-740, gnl|rheMac2|chr4 (56993909-56994121) | |
| 601-740, gnl|rn3|chr9 (32376224-32376028) | |
| 601-740, gnl|tetNig1|chr17 (4278378-4278188) | |
| 601-740, gnl|xenTro1|scaffold_192 (77790-78020) | |
| 882-1067, gnl|bosTau2|chr23 (2985637-2985452) | |
| 882-1067, gnl|canFam2|chr12 (27710418-27710584) | |
| 882-1067, gnl|danRer3|chr13 (27208966-27208796) | |
| 882-1067, gnl|echTel1|scaffold_297013 (33034-33206) | |
| 882-1067, gnl|fr1|chrUn (83433368-83433537) | |
| 882-1067, gnl|galGal2|chr3 (84984427-84984263) | |
| 882-1067, gnl|hg17|chr6 (57506071-57506240) | |
| 882-1067, gnl|Hg17|chr6 (57506091-57506276) | |
| 882-1067, gnl|loxAfr1|scaffold_41107 (3631-3443) | |
| 882-1067, gnl|mm7|chr1 (33735282-33735114) | |
| 882-1067, gnl|Mm7|chr1 (33735261-33735076) | |
| 882-1067, gnl|monDom2|scaffold_0 (177648437-177648273) | |
| 882-1067, gnl|oryCun1|scaffold_175838 (107638-107470) | |
| 882-1067, gnl|panTro1|chr5 (58813874-58814043) | |
| 882-1067, gnl|rheMac2|chr4 (57135126-57135295) | |
| 882-1067, gnl|rn3|chr9 (32265673-32265504) | |
| 882-1067, gnl|tetNig1|chr17 (4275912-4275762) | |
| 882-1067, gnl|xenTro1|scaffold_192 (95297-95469) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.142308) | |
| pla (0.133672) |