Non-Coding RNA Search

Ss1.1-Pig3-SRG8012J05.3

Sequence:


               
               TGCTGAACTGAAGCACTGCCTGTACGTGGTCGGGGGGCACACTGCTGCCACCGGCTGCCT
CCCAGCCTCCCCCTCAGTCTCTCTAAAGCAAGTAGAACATTATGATCCCACAACAAACAA
ATGGACCATGGTGGCTCCCCTCCGAGAAGGGGTCAGCAATGCCGCGGTGGTGAGCGCCAA
GCTCAAGCTGTTTGCTTTCGGAGGTACCAGTGTCAGTCACGACAAGCTCCCCAAGGTTCA
GTGTTATGATCAGTGTGAAAACAGGTGGACCGTCCCGGCCACCTGTCCCCAGCCCTGGCG
TTACACGGCAGCAGCTGTGCTGGGTAACCAGATTTTTATTATGGGGGGAGATACCGAGTT
CTCTGCCTGCTCTGCTTATAAGTTCAACAGCGAGACTTACCAGTGGACCAAGGTGGGAGA
CGTGACCGCAAAGCGCATGAGCTGCCACGCTGTGGCCTCCGGAAACAAGCTCTATGTCGT
CGGAGGGTACTTTGGCATTCAGCGGTGCAAAACTCTGGACTGCTACGATCCAACCTTGGA
CGTGTGGAACAGCATAACCACAGTCCCGTACTCGCTGATCCCTACGGCATTCGTCAGCAC
CTGGAAACATCTGCCCTCTTAAATGCAGCGCATCCTAAAAAGAGTGAGCATGAGCTGACT
CCATCCCTGCATGATCAAGATGAGATTTCTACTTTGGAGAGACCAAACTGAATGAAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGAACTGAAGCACTGCCTGTACGTGGTCGGGGGGCACACTGCTGCCACCGGCTGCCT
CCCAGCCTCCCCCTCAGTCTCTCTAAAGCAAGTAGAACATTATGATCCCACAACAAACAA
ATGGACCATGGTGGCTCCCCTCCGAGAAGGGGTCAGCAATGCCGCGGTGGTGAGCGCCAA
GCTCAAGCTGTTTGCTTTCGGAGGTACCAGTGTCAGTCACGACAAGCTCCCCAAGGTTCA
GTGTTATGATCAGTGTGAAAACAGGTGGACCGTCCCGGCCACCTGTCCCCAGCCCTGGCG
TTACACGGCAGCAGCTGTGCTGGGTAACCAGATTTTTATTATGGGGGGAGATACCGAGTT
CTCTGCCTGCTCTGCTTATAAGTTCAACAGCGAGACTTACCAGTGGACCAAGGTGGGAGA
CGTGACCGCAAAGCGCATGAGCTGCCACGCTGTGGCCTCCGGAAACAAGCTCTATGTCGT
CGGAGGGTACTTTGGCATTCAGCGGTGCAAAACTCTGGACTGCTACGATCCAACCTTGGA
CGTGTGGAACAGCATAACCACAGTCCCGTACTCGCTGATCCCTACGGCATTCGTCAGCAC
CTGGAAACATCTGCCCTCTTAAATGCAGCGCATCCTAAAAAGAGTGAGCATGAGCTGACT
CCATCCCTGCATGATCAAGATGAGATTTCTACTTTGGAGAGACCAAACTGAATGAAGAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7ZUA8_XENLA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7ZUA8_XENLA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               40-159, - strand, RNAz p=0.569384
               

               
               42-161, - strand, RNAz p=0.646633
               

               
               240-359, - strand, RNAz p=0.909261
               

               
               520-639, - strand, RNAz p=0.609239

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.569384
               

               
               42-161, - strand, RNAz p=0.646633
               

               
               240-359, - strand, RNAz p=0.909261
               

               
               520-639, - strand, RNAz p=0.609239

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               487-595, - strand, RNAmicro p=0.997994

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               487-595, - strand, RNAmicro p=0.997994

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-661, gnl|bosTau2|chr25 (13291545-13290885)
               

               
               1-661, gnl|Hg17|chr5 (73966918-73966254)
               

               
               1-661, gnl|Mm7|chr13 (94316536-94317195)
               


               
               2-631, gnl|bosTau2|chr21 (9881439-9880809)
               

               
               2-631, gnl|Hg17|chr15 (84112896-84112259)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-661, gnl|bosTau2|chr25 (13291545-13290885)
               

               
               1-661, gnl|Hg17|chr5 (73966918-73966254)
               

               
               1-661, gnl|Mm7|chr13 (94316536-94317195)
               


               
               2-631, gnl|bosTau2|chr21 (9881439-9880809)
               

               
               2-631, gnl|Hg17|chr15 (84112896-84112259)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	40-159, - strand, RNAz p=0.569384
	42-161, - strand, RNAz p=0.646633
	240-359, - strand, RNAz p=0.909261
	520-639, - strand, RNAz p=0.609239

	1-661, gnl\|bosTau2\|chr25 (13291545-13290885)
	1-661, gnl\|Hg17\|chr5 (73966918-73966254)
	1-661, gnl\|Mm7\|chr13 (94316536-94317195)

	2-631, gnl\|bosTau2\|chr21 (9881439-9880809)
	2-631, gnl\|Hg17\|chr15 (84112896-84112259)