Non-Coding RNA Search

Ss1.1-Pig3-SRG8012J10.5

Sequence:


               
               GGGCCAGCGGCACCCATGGCCCTGCAGAGCGAGCCCACCGCAGCGCCCGAGGCCAACGGC
TGCCCACCTCACTGGAAGAACTTCACAGACAAATGCTACTATTTTTCGGTTGAGAAAGAA
ATTTTTGAGGATGCAAAACTTTTCTGTGAGGACAAGTCTTCACATCTCGTTTTCATAAAC
ACGAGGGAGGAACAGCAATGGATCAAAAAGCAGACGGTAGGGAGAGAGAGCCACTGGATT
GGCCTCACAGACTCAGAGCAGGAAAACGAGTGGAGGTGGCTGGATGGCACGTCTCCAGAG
TATAAAAACTGGAAAGCTGGACAGCCAGATAACTGGGGTCACGGCCACGGGCCAGGAGAA
GACTGTGCCGGGCTGATTTATGCTGGGCAGTGGAATGATTTCCAGTGCGAGGACATCAAT
AACTTCATTTGCGAGAAAAACAGGGAGACAGTACTAGCATCTGCATTATAATGGACCATG
ATATAATAATAGGAGCAAATTTTCGGACAGTTCTCAAAGGCAAAGGATACTTCTTTCTGA
TTGCATCAACTTCTCACCAGATTGAAAAAAGCACTGAAAACCAATTACTGAAAAAATTGA
CAGCCAGTGTTCTTTACAATCCACCATTACTCAAGGACTTTGGGACAAAAATGTCCCCCA
GTAATGATATATTGATTTTCAGTATGCAAATGGACTGAATGGCATAGATTTTCCTCAGCT
AGTAACCGTACTGTTATGCAAATCGTATCTTCCAGAGTATGGAACACTCCAATCAGAGAA
AGCTTATCATTGGTTATTGAGCTTTAGGAAGAACCGGAAACATACTGTGTAAACAGTACC
TTACATTTCTAAAATCCCAAATGTAGGAAAAATATGCAGACATACAGATATATAAGCCAA
CTCTTAGTAACAATAAGAAATACACTTAAAGAGCTTTTAAAAACTTTGTATTTTTGTACA
AAATATTTGCCTTTTTACAATTGTTTTCCTTTTTATCCTTTTTTTTTTTTTTGTCATTTT
ACCAATATAGTACATGAAACCAAAGAAAACAATAATGGTACTAATAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCAGCGGCACCCATGGCCCTGCAGAGCGAGCCCACCGCAGCGCCCGAGGCCAACGGC
TGCCCACCTCACTGGAAGAACTTCACAGACAAATGCTACTATTTTTCGGTTGAGAAAGAA
ATTTTTGAGGATGCAAAACTTTTCTGTGAGGACAAGTCTTCACATCTCGTTTTCATAAAC
ACGAGGGAGGAACAGCAATGGATCAAAAAGCAGACGGTAGGGAGAGAGAGCCACTGGATT
GGCCTCACAGACTCAGAGCAGGAAAACGAGTGGAGGTGGCTGGATGGCACGTCTCCAGAG
TATAAAAACTGGAAAGCTGGACAGCCAGATAACTGGGGTCACGGCCACGGGCCAGGAGAA
GACTGTGCCGGGCTGATTTATGCTGGGCAGTGGAATGATTTCCAGTGCGAGGACATCAAT
AACTTCATTTGCGAGAAAAACAGGGAGACAGTACTAGCATCTGCATTATAATGGACCATG
ATATAATAATAGGAGCAAATTTTCGGACAGTTCTCAAAGGCAAAGGATACTTCTTTCTGA
TTGCATCAACTTCTCACCAGATTGAAAAAAGCACTGAAAACCAATTACTGAAAAAATTGA
CAGCCAGTGTTCTTTACAATCCACCATTACTCAAGGACTTTGGGACAAAAATGTCCCCCA
GTAATGATATATTGATTTTCAGTATGCAAATGGACTGAATGGCATAGATTTTCCTCAGCT
AGTAACCGTACTGTTATGCAAATCGTATCTTCCAGAGTATGGAACACTCCAATCAGAGAA
AGCTTATCATTGGTTATTGAGCTTTAGGAAGAACCGGAAACATACTGTGTAAACAGTACC
TTACATTTCTAAAATCCCAAATGTAGGAAAAATATGCAGACATACAGATATATAAGCCAA
CTCTTAGTAACAATAAGAAATACACTTAAAGAGCTTTTAAAAACTTTGTATTTTTGTACA
AAATATTTGCCTTTTTACAATTGTTTTCCTTTTTATCCTTTTTTTTTTTTTTGTCATTTT
ACCAATATAGTACATGAAACCAAAGAAAACAATAATGGTACTAATAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               602-717, + strand, RNAz p=0.699921

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               602-717, + strand, RNAz p=0.699921

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_030781, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_030781, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               450-1067, gnl|bosTau2|chr24 (25647229-25646613)
               

               
               450-1067, gnl|Hg17|chr18 (310066-309458)
               

               
               450-1067, gnl|Mm7|chr18 (10083536-10084501)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               450-1067, gnl|bosTau2|chr24 (25647229-25646613)
               

               
               450-1067, gnl|Hg17|chr18 (310066-309458)
               

               
               450-1067, gnl|Mm7|chr18 (10083536-10084501)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               ret (0.3862)
               

               
               liv (0.292569)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               liv (0.292569)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	450-1067, gnl\|bosTau2\|chr24 (25647229-25646613)
	450-1067, gnl\|Hg17\|chr18 (310066-309458)
	450-1067, gnl\|Mm7\|chr18 (10083536-10084501)

	ret (0.3862)
	liv (0.292569)
	sin (0.174948)
	nje (0.16592)
	cje (0.165235)
	tbr (0.154178)
	fat (0.147427)
	lin (0.145603)
	ste (0.135208)
	cov (0.132153)
	kid (0.129735)
	bla (0.124347)
	tra (0.123092)
	cly (0.120642)
	eru (0.120048)
	spc (0.113366)
	eje (0.0988338)