Non-Coding RNA Search

Ss1.1-Pig3-SRG8012J20.3

Sequence:


               
               CATATGATGCAAGTGATAGCACCCCAGTTTCAACGGGACTTCATTTCCTTGCTCCCTAAA
GAGCTGGCACTTTATGTGCTTTCATTCCTGGAACCCAAAGACCTGCTACAGGCTGCTCAG
ACGTGTCGCTACTGGAGGATTCTGGCTGAAGACAACCTTCTCTGGAGAGAAAAATGCAAA
GAAGAGGGTATTGACGAACCACTGCATATCAAGAGAAGAAAAGTAATAAAACCAGGTTTC
ATACACAGTCCATGGAAAAGTGCCTACATCAGACAGCACAGAATTGATACTAACTGGAGG
CGAGGAGAACTCAAATCTCCTAAGGTGCTGAAAGGGCATGATGATCACGTGATCACATGC
TTACAGTTTTGTGGGAACCGAATCGTTAGTGGCTCTGATGACAACACTTTAAAAGTCTGG
TCGGCAGTCACAGGCAAATGTCTGAGGACATTAGTGGGACACACAGGTGGAGTGTGGTCA
TCACAGATGAGAGACAATATCATCATTAGTGGATCGACAGACCGGACTCTCAAAGTGTGG
AACGCGGAGACGGGAGAATGCATACACACCTTGTATGGACATACTTCCACTGTGCGTTGT
ATGCACCTCCATGAAAAGAGAGTTGTTAGTGGTTCTCGCGATGCCACTCTTTGTCAGAAT
GATATTGAGACAGGCCAGTGTTTACACGTTTTGATGGGTCACGTGGCAGCGGTCCGCTGT
GTCCAGTACGACGGCAGGAGGGTTGTGAGCGGAGCGTATGACTTCATGGTGAAAGTGTGG
GACCCCGAGACGGAGACCTGCCTGCACACGTTGCAGGGGCACACCAACAGGGTCTACTCG
TTACAGTTTGATGGCATCCATGTGGTGAGTGGATCTCTTGATACATCGATCCGAGTCTGG
GATGTGGAGACTGGGAATTGCATTCACACCTTAACAGGACATCAGTCATTAACAAGCGGA
ATGGAACTCAAGGACAACATTCTTGTCTCTGGGAATGCAGATTCCACAGTTAAAATCTGG
GATATCAAAACAGGACAATGTTTACAAACATTGCAAGGTCCCAACAAGCATCAGAGTGCT
GTGACCTGTTTACAGTTCAACAAGAACTTTGTCATTACCAGCTCAGATGACGGAACTGTA
AAACTGTGGGACTTGAAAACGGGTGAATTTATTCGCAACCTAGTCACATTGGAGAGTGGG
GGGAGCGGGGGAGTCGTGTGGCGGATCAGAGCCTCGAACACAAAGCTGGTGTGTGCAGTC
GGTAGTCGCAATGGGACGGAAGAGACCAAGCTGCTGGTGCTGGACTTTGATGTGGACATG
AAGTGACGCGCAGGAAGGACGGCATTGTCCAACGCCTAGGCGACGTACGTACTCCCTGCC
CTTCCCCCTGCCAAAAAAAAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATATGATGCAAGTGATAGCACCCCAGTTTCAACGGGACTTCATTTCCTTGCTCCCTAAA
GAGCTGGCACTTTATGTGCTTTCATTCCTGGAACCCAAAGACCTGCTACAGGCTGCTCAG
ACGTGTCGCTACTGGAGGATTCTGGCTGAAGACAACCTTCTCTGGAGAGAAAAATGCAAA
GAAGAGGGTATTGACGAACCACTGCATATCAAGAGAAGAAAAGTAATAAAACCAGGTTTC
ATACACAGTCCATGGAAAAGTGCCTACATCAGACAGCACAGAATTGATACTAACTGGAGG
CGAGGAGAACTCAAATCTCCTAAGGTGCTGAAAGGGCATGATGATCACGTGATCACATGC
TTACAGTTTTGTGGGAACCGAATCGTTAGTGGCTCTGATGACAACACTTTAAAAGTCTGG
TCGGCAGTCACAGGCAAATGTCTGAGGACATTAGTGGGACACACAGGTGGAGTGTGGTCA
TCACAGATGAGAGACAATATCATCATTAGTGGATCGACAGACCGGACTCTCAAAGTGTGG
AACGCGGAGACGGGAGAATGCATACACACCTTGTATGGACATACTTCCACTGTGCGTTGT
ATGCACCTCCATGAAAAGAGAGTTGTTAGTGGTTCTCGCGATGCCACTCTTTGTCAGAAT
GATATTGAGACAGGCCAGTGTTTACACGTTTTGATGGGTCACGTGGCAGCGGTCCGCTGT
GTCCAGTACGACGGCAGGAGGGTTGTGAGCGGAGCGTATGACTTCATGGTGAAAGTGTGG
GACCCCGAGACGGAGACCTGCCTGCACACGTTGCAGGGGCACACCAACAGGGTCTACTCG
TTACAGTTTGATGGCATCCATGTGGTGAGTGGATCTCTTGATACATCGATCCGAGTCTGG
GATGTGGAGACTGGGAATTGCATTCACACCTTAACAGGACATCAGTCATTAACAAGCGGA
ATGGAACTCAAGGACAACATTCTTGTCTCTGGGAATGCAGATTCCACAGTTAAAATCTGG
GATATCAAAACAGGACAATGTTTACAAACATTGCAAGGTCCCAACAAGCATCAGAGTGCT
GTGACCTGTTTACAGTTCAACAAGAACTTTGTCATTACCAGCTCAGATGACGGAACTGTA
AAACTGTGGGACTTGAAAACGGGTGAATTTATTCGCAACCTAGTCACATTGGAGAGTGGG
GGGAGCGGGGGAGTCGTGTGGCGGATCAGAGCCTCGAACACAAAGCTGGTGTGTGCAGTC
GGTAGTCGCAATGGGACGGAAGAGACCAAGCTGCTGGTGCTGGACTTTGATGTGGACATG
AAGTGACGCGCAGGAAGGACGGCATTGTCCAACGCCTAGGCGACGTACGTACTCCCTGCC
CTTCCCCCTGCCAAAAAAAAAAGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|26328005|dbj|BAC27743.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|26328005|dbj|BAC27743.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1056-1174, - strand, RNAz p=0.885146

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1056-1174, - strand, RNAz p=0.885146

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               187-332, gnl|bosTau2|chr17 (836718-836864)
               

               
               187-332, gnl|Hg17|chr4 (153609626-153609480)
               

               
               187-332, gnl|Mm7|chr3 (85082015-85082160)
               


               
               619-846, gnl|bosTau2|chr17 (841411-841638)
               

               
               619-846, gnl|Hg17|chr4 (153604990-153604763)
               

               
               619-846, gnl|Mm7|chr3 (85087252-85087479)
               


               
               1056-1402, gnl|bosTau2|chr17 (844666-845009)
               

               
               1056-1402, gnl|Hg17|chr4 (153601908-153601568)
               

               
               1056-1402, gnl|Mm7|chr3 (85090122-85090511)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               187-332, gnl|bosTau2|chr17 (836718-836864)
               

               
               187-332, gnl|Hg17|chr4 (153609626-153609480)
               

               
               187-332, gnl|Mm7|chr3 (85082015-85082160)
               


               
               619-846, gnl|bosTau2|chr17 (841411-841638)
               

               
               619-846, gnl|Hg17|chr4 (153604990-153604763)
               

               
               619-846, gnl|Mm7|chr3 (85087252-85087479)
               


               
               1056-1402, gnl|bosTau2|chr17 (844666-845009)
               

               
               1056-1402, gnl|Hg17|chr4 (153601908-153601568)
               

               
               1056-1402, gnl|Mm7|chr3 (85090122-85090511)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	187-332, gnl\|bosTau2\|chr17 (836718-836864)
	187-332, gnl\|Hg17\|chr4 (153609626-153609480)
	187-332, gnl\|Mm7\|chr3 (85082015-85082160)

	619-846, gnl\|bosTau2\|chr17 (841411-841638)
	619-846, gnl\|Hg17\|chr4 (153604990-153604763)
	619-846, gnl\|Mm7\|chr3 (85087252-85087479)

	1056-1402, gnl\|bosTau2\|chr17 (844666-845009)
	1056-1402, gnl\|Hg17\|chr4 (153601908-153601568)
	1056-1402, gnl\|Mm7\|chr3 (85090122-85090511)

	fce (0.271592)
	eye (0.170503)
	isp (0.150376)
	sug (0.127291)
	eep (0.122564)
	ecc (0.115035)