Non-Coding RNA Search

Ss1.1-Pig3-SRG8012K03.5

Sequence:


               
               TGGTGGGGGCGCTGTGGGCAAAGTCTTGTTTACTACATAATGCACATGATAAATGGCCTT
ATAAACTGATTCTTTGTGGTATGATGACTTATAATAAACTGACCCTAAAGAACGCAGTGG
CTTTTAAACTGCCATTACCTTGTTTTTAATGAAGCCATACCTGAAGCTCTGATCTTTGGG
AGCAGTTGTGGGGAGGTTGAAGGAAAGGTAAAAATTAGAGCAGTACCCTGCTGTTGTGCC
AAGTGGCCTGCCTTGCTGCCATTTGCATGGATAAATGAGTCCTTCCATGCAGGGGGAGCC
TTCAGCCCATGCAATCTGGTTTTTTTTCAGCACAATTCCCAAGTGTCTGGGGCAAAGCCT
GGTTGCTTGGCTCAGGCCTTCCAAGGACATGTGGGACACATCCCTGACTGAGTCCTGGGT
CGGAGTAGTAACCTGACTTCATCCTTACATTAGGTCTTGTTACATCAGAGGCGAGAGTGG
CTGGATGACAGAAAGCATCTTCACAGGGTGTCAGCCAGCTTGCCCACACAATCTTGATGA
TCCCTCTCTGGATAAAAGTCGCTAATATTAAGAGAAGGGGAGAGAGAGAATAAGAATAGA
GAAATAGCTTATGGGGAGTTGAGGTCTTATTTTCATTCCTGTAAACTGGAGTTGCAAGAG
ATGCTGCAATGGTTATCACAGTCCTGTAATGCTTATATAATCTGAGAAAGTGAGAGAAGG
GGAAATGTGAATAAAATTTTTAAAAATTTAGTCATGTGTTAAAATGTCACTCTTTTTCTC
CCTTACCCACCCCCCCACCCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTGGGGGCGCTGTGGGCAAAGTCTTGTTTACTACATAATGCACATGATAAATGGCCTT
ATAAACTGATTCTTTGTGGTATGATGACTTATAATAAACTGACCCTAAAGAACGCAGTGG
CTTTTAAACTGCCATTACCTTGTTTTTAATGAAGCCATACCTGAAGCTCTGATCTTTGGG
AGCAGTTGTGGGGAGGTTGAAGGAAAGGTAAAAATTAGAGCAGTACCCTGCTGTTGTGCC
AAGTGGCCTGCCTTGCTGCCATTTGCATGGATAAATGAGTCCTTCCATGCAGGGGGAGCC
TTCAGCCCATGCAATCTGGTTTTTTTTCAGCACAATTCCCAAGTGTCTGGGGCAAAGCCT
GGTTGCTTGGCTCAGGCCTTCCAAGGACATGTGGGACACATCCCTGACTGAGTCCTGGGT
CGGAGTAGTAACCTGACTTCATCCTTACATTAGGTCTTGTTACATCAGAGGCGAGAGTGG
CTGGATGACAGAAAGCATCTTCACAGGGTGTCAGCCAGCTTGCCCACACAATCTTGATGA
TCCCTCTCTGGATAAAAGTCGCTAATATTAAGAGAAGGGGAGAGAGAGAATAAGAATAGA
GAAATAGCTTATGGGGAGTTGAGGTCTTATTTTCATTCCTGTAAACTGGAGTTGCAAGAG
ATGCTGCAATGGTTATCACAGTCCTGTAATGCTTATATAATCTGAGAAAGTGAGAGAAGG
GGAAATGTGAATAAAATTTTTAAAAATTTAGTCATGTGTTAAAATGTCACTCTTTTTCTC
CCTTACCCACCCCCCCACCCCCCC

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               4-503, gnl|bosTau2|chr10 (61287728-61287245)
               

               
               4-503, gnl|Hg17|chr14 (77043136-77042638)
               


               
               512-784, gnl|bosTau2|chr10 (61287208-61286918)
               

               
               512-784, gnl|Hg17|chr14 (77042598-77042288)
               

               
               512-784, gnl|Mm7|chr12 (85308168-85307897)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-503, gnl|bosTau2|chr10 (61287728-61287245)
               

               
               4-503, gnl|Hg17|chr14 (77043136-77042638)
               


               
               512-784, gnl|bosTau2|chr10 (61287208-61286918)
               

               
               512-784, gnl|Hg17|chr14 (77042598-77042288)
               

               
               512-784, gnl|Mm7|chr12 (85308168-85307897)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               fhi (0.339155)
               

               
               bla (0.248694)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               bla (0.248694)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

	4-503, gnl\|bosTau2\|chr10 (61287728-61287245)
	4-503, gnl\|Hg17\|chr14 (77043136-77042638)

	512-784, gnl\|bosTau2\|chr10 (61287208-61286918)
	512-784, gnl\|Hg17\|chr14 (77042598-77042288)
	512-784, gnl\|Mm7\|chr12 (85308168-85307897)

	fhi (0.339155)
	bla (0.248694)
	cmu (0.186393)
	ton (0.1755)
	lin (0.145603)
	cst (0.140036)
	sug (0.127291)
	pgl (0.118483)