Ss1.1-Pig3-SRG8012K20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGAGCCATGTCTGCGACCTACGCCACAGTTCAGGGCAATGCCCAGATGCTTAACCTGCT GAGCCACAGCAGGAACTCCCAGTGCAGCAGTGCAGCGTTCTTTATAATAGCAAAATGAGA ACATTTAAATGTCCATCAGAATTGGGCACATAAACTACACAGCATCCACACAATAAACAG ATGGAGTCCATTAGGAGAAAACGTACCTGCGGGTATCCACACCGGGTTTGTGCACACCTC CTATAAATTCCGCATCTGCAGAGTTTCTCTGCGTATCGAAGACACAGGAAGACGGGCTCT CTGTGCCTCGCGGGGACCTGACGGCACTTGGGGACAGTGTCAGGGCTGTTTTCTGTGGTC TCTGCTTTTTCAGCAACATCTCAATGAGCTGATGACAAAAAAGTGGCTGTTGGGATCGAA CGCCGTAGACATCATCTGTGTCACCGTGGAAGACTACTTCAATGACTTTGCCAAAATTAA AAAGCCATATAAAAAGCGGATGACGGCCGAGGCGCACCGGCGCGTGGTGGTGGAGTACCT GCGGGCGGTCATGCAGAAGCGCATCTCCTTCCGCAGCGCCGAGGAGCGCAAGGAGGGCGC CGAGAGGATGGTGCGCGAGGCGGAGCAGCTGCGCTTCCTCTTCCGGAAGCTGGCTTCTGG GTTCGGGGAGGATATGGACGGGTACTGTGACACCATCGTCGCCGTGGCAGAGGTCATTAA GCTCACGGACCCGTCTCTGCTCTACTTGGAGGTCTCCACACTGGTCAGCAAATACCCAGA TATCAGGGACGACCACATTGGCGCGCTGCTGGCCATGCGGGGGGACGCCACCCGAGACAT GAGGCAGACCATCATCGAGACGCTGGAGCAGGGCCCGGCCCAGGCCAGCCCGGATCACGT GCCTATCTTCAGGGACATCGTGGTTCCCAGCCTGAACGTGGCCAAGCTCCTCAAGTAGTG GCCGGGACCCCACTGTCCATCTCAGCCGCATGCACCATCTCGGGCAGCCTGTAAGGAGGC CTCTGTTCCTGGGCGCTCCTGAGACGCTGCTGCTCAATAAAGAGTGAACTTCTGCAGGAA GTGCCCACTCGTGAGGGTTTCATGCCACACGTGACCTCAGGGTCACCTTCCCGCCTGGAC ACAGGGCCCCCACATGCCAAGTGCCCCTTGTCTCGAGTTACAGCTCCTCATTTGCTGTCC CCCTCCACCCACCAGTCCCCAGGGCATGGTGGGTACATCCTCGCTGGTAGTCGGGTGGGC GGCCCCCGAGGGGCAGGTCTGTGGGCTGTGCTTGTTCCTTTCGCGCTGCCTGAGCCCCTG CGCCTCTCTCTCCATGGTCTCTGCCTCATTGTGCAAATTAACCTTTATTGTTACGCCAGA TTAATTACAAAACTGCATCTGATCCCCCAGCCCCATCCCGGGGCACCGCCAGTGACGGCT CCCAACAGGGACTTGGAGGTGTTTGCCGCCTTTCCTCCCCCCATTTCACTCCGGAGGGGC ATCCCCGTGGTGCAGCCTGTGTTAACTCTTCCCCTCCGCCTCCTTCTTAACCCCCCCCCG CCCCCCGCATGCAGGAAAGCCTGTGCGGTTTCCTCCCGAGGAGGGATGAACACCTCATAG GGAGGACTTTTCCTTGAAAGGATCCCACCCACATGGAAACACGAGAGACCTTCTGAGGAA CACTCCTGATTCAAAAAAGATGTAGTCTCCCTACGGATTTCTAGCCAACAGCGTGCTGTC TCCTACACAGGTGTTAGTCTGGTCCCGCCTAGATGACACTTGGTGTCTGGTGGGAGCACG GCTCAGTGAGCCTCTTCTGATGCAGCGCAGTTGGTGTCAGCTGTCGTCAGCTGTTATCTC CTATAATAAAAGTCTGCTTGTCTTCCCACCGAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGAGCCATGTCTGCGACCTACGCCACAGTTCAGGGCAATGCCCAGATGCTTAACCTGCT GAGCCACAGCAGGAACTCCCAGTGCAGCAGTGCAGCGTTCTTTATAATAGCAAAATGAGA ACATTTAAATGTCCATCAGAATTGGGCACATAAACTACACAGCATCCACACAATAAACAG ATGGAGTCCATTAGGAGAAAACGTACCTGCGGGTATCCACACCGGGTTTGTGCACACCTC CTATAAATTCCGCATCTGCAGAGTTTCTCTGCGTATCGAAGACACAGGAAGACGGGCTCT CTGTGCCTCGCGGGGACCTGACGGCACTTGGGGACAGTGTCAGGGCTGTTTTCTGTGGTC TCTGCTTTTTCAGCAACATCTCAATGAGCTGATGACAAAAAAGTGGCTGTTGGGATCGAA CGCCGTAGACATCATCTGTGTCACCGTGGAAGACTACTTCAATGACTTTGCCAAAATTAA AAAGCCATATAAAAAGCGGATGACGGCCGAGGCGCACCGGCGCGTGGTGGTGGAGTACCT GCGGGCGGTCATGCAGAAGCGCATCTCCTTCCGCAGCGCCGAGGAGCGCAAGGAGGGCGC CGAGAGGATGGTGCGCGAGGCGGAGCAGCTGCGCTTCCTCTTCCGGAAGCTGGCTTCTGG GTTCGGGGAGGATATGGACGGGTACTGTGACACCATCGTCGCCGTGGCAGAGGTCATTAA GCTCACGGACCCGTCTCTGCTCTACTTGGAGGTCTCCACACTGGTCAGCAAATACCCAGA TATCAGGGACGACCACATTGGCGCGCTGCTGGCCATGCGGGGGGACGCCACCCGAGACAT GAGGCAGACCATCATCGAGACGCTGGAGCAGGGCCCGGCCCAGGCCAGCCCGGATCACGT GCCTATCTTCAGGGACATCGTGGTTCCCAGCCTGAACGTGGCCAAGCTCCTCAAGTAGTG GCCGGGACCCCACTGTCCATCTCAGCCGCATGCACCATCTCGGGCAGCCTGTAAGGAGGC CTCTGTTCCTGGGCGCTCCTGAGACGCTGCTGCTCAATAAAGAGTGAACTTCTGCAGGAA GTGCCCACTCGTGAGGGTTTCATGCCACACGTGACCTCAGGGTCACCTTCCCGCCTGGAC ACAGGGCCCCCACATGCCAAGTGCCCCTTGTCTCGAGTTACAGCTCCTCATTTGCTGTCC CCCTCCACCCACCAGTCCCCAGGGCATGGTGGGTACATCCTCGCTGGTAGTCGGGTGGGC GGCCCCCGAGGGGCAGGTCTGTGGGCTGTGCTTGTTCCTTTCGCGCTGCCTGAGCCCCTG CGCCTCTCTCTCCATGGTCTCTGCCTCATTGTGCAAATTAACCTTTATTGTTACGCCAGA TTAATTACAAAACTGCATCTGATCCCCCAGCCCCATCCCGGGGCACCGCCAGTGACGGCT CCCAACAGGGACTTGGAGGTGTTTGCCGCCTTTCCTCCCCCCATTTCACTCCGGAGGGGC ATCCCCGTGGTGCAGCCTGTGTTAACTCTTCCCCTCCGCCTCCTTCTTAACCCCCCCCCG CCCCCCGCATGCAGGAAAGCCTGTGCGGTTTCCTCCCGAGGAGGGATGAACACCTCATAG GGAGGACTTTTCCTTGAAAGGATCCCACCCACATGGAAACACGAGAGACCTTCTGAGGAA CACTCCTGATTCAAAAAAGATGTAGTCTCCCTACGGATTTCTAGCCAACAGCGTGCTGTC TCCTACACAGGTGTTAGTCTGGTCCCGCCTAGATGACACTTGGTGTCTGGTGGGAGCACG GCTCAGTGAGCCTCTTCTGATGCAGCGCAGTTGGTGTCAGCTGTCGTCAGCTGTTATCTC CTATAATAAAAGTCTGCTTGTCTTCCCACCGAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 88-200, gnl|bosTau2|chr9 (46052870-46052983) | |
| 88-200, gnl|canFam2|chr34 (14801105-14800568) | |
| 88-200, gnl|hg17|chr5 (516445-517154) | |
| 88-200, gnl|Hg17|chr5 (516889-516989) | |
| 88-200, gnl|mm7|chr13 (71114044-71113445) | |
| 88-200, gnl|Mm7|chr13 (71113717-71113602) | |
| 88-200, gnl|panTro1|chr4 (614808-615520) | |
| 88-200, gnl|rheMac2|chr6 (229115-229855) | |
| 88-200, gnl|rn3|chr1 (29924173-29924743) | |
| 495-657, gnl|bosTau2|chr9 (46055237-46055399) | |
| 495-657, gnl|canFam2|chr34 (14798952-14798822) | |
| 495-657, gnl|danRer3|chr2 (44688043-44688172) | |
| 495-657, gnl|dasNov1|scaffold_19925 (10080-9964) | |
| 495-657, gnl|echTel1|scaffold_318276 (40596-40723) | |
| 495-657, gnl|fr1|chrUn (305067544-305067672) | |
| 495-657, gnl|galGal2|chr11 (966041-965915) | |
| 495-657, gnl|hg17|chr5 (518204-518334) | |
| 495-657, gnl|Hg17|chr5 (518224-518386) | |
| 495-657, gnl|loxAfr1|scaffold_176538 (1674-1804) | |
| 495-657, gnl|mm7|chr13 (71107002-71106874) | |
| 495-657, gnl|Mm7|chr13 (71106982-71106820) | |
| 495-657, gnl|monDom2|scaffold_4 (13153946-13154071) | |
| 495-657, gnl|oryCun1|scaffold_190038 (24279-24407) | |
| 495-657, gnl|panTro1|chr4 (616522-616652) | |
| 495-657, gnl|rheMac2|chr6 (230714-230844) | |
| 495-657, gnl|rn3|chr1 (29929219-29929347) | |
| 495-657, gnl|tetNig1|chrUn_random (18583950-18584065) | |
| 495-657, gnl|xenTro1|scaffold_470 (476655-476769) | |
| 784-972, gnl|bosTau2|chr9 (46056077-46056265) | |
| 784-972, gnl|Hg17|chr5 (519839-520012) | |
| 784-972, gnl|Mm7|chr13 (71105079-71104903) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 88-200, gnl|bosTau2|chr9 (46052870-46052983) | |
| 88-200, gnl|canFam2|chr34 (14801105-14800568) | |
| 88-200, gnl|hg17|chr5 (516445-517154) | |
| 88-200, gnl|Hg17|chr5 (516889-516989) | |
| 88-200, gnl|mm7|chr13 (71114044-71113445) | |
| 88-200, gnl|Mm7|chr13 (71113717-71113602) | |
| 88-200, gnl|panTro1|chr4 (614808-615520) | |
| 88-200, gnl|rheMac2|chr6 (229115-229855) | |
| 88-200, gnl|rn3|chr1 (29924173-29924743) | |
| 495-657, gnl|bosTau2|chr9 (46055237-46055399) | |
| 495-657, gnl|canFam2|chr34 (14798952-14798822) | |
| 495-657, gnl|danRer3|chr2 (44688043-44688172) | |
| 495-657, gnl|dasNov1|scaffold_19925 (10080-9964) | |
| 495-657, gnl|echTel1|scaffold_318276 (40596-40723) | |
| 495-657, gnl|fr1|chrUn (305067544-305067672) | |
| 495-657, gnl|galGal2|chr11 (966041-965915) | |
| 495-657, gnl|hg17|chr5 (518204-518334) | |
| 495-657, gnl|Hg17|chr5 (518224-518386) | |
| 495-657, gnl|loxAfr1|scaffold_176538 (1674-1804) | |
| 495-657, gnl|mm7|chr13 (71107002-71106874) | |
| 495-657, gnl|Mm7|chr13 (71106982-71106820) | |
| 495-657, gnl|monDom2|scaffold_4 (13153946-13154071) | |
| 495-657, gnl|oryCun1|scaffold_190038 (24279-24407) | |
| 495-657, gnl|panTro1|chr4 (616522-616652) | |
| 495-657, gnl|rheMac2|chr6 (230714-230844) | |
| 495-657, gnl|rn3|chr1 (29929219-29929347) | |
| 495-657, gnl|tetNig1|chrUn_random (18583950-18584065) | |
| 495-657, gnl|xenTro1|scaffold_470 (476655-476769) | |
| 784-972, gnl|bosTau2|chr9 (46056077-46056265) | |
| 784-972, gnl|Hg17|chr5 (519839-520012) | |
| 784-972, gnl|Mm7|chr13 (71105079-71104903) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| fty (0.351679) | |
| fhi (0.339155) | |
| cga (0.279096) | |
| nca (0.273748) | |
| ecc (0.23007) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nco (0.161734) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| pla (0.133672) | |
| ute (0.132784) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.351679) | |
| fhi (0.339155) | |
| cga (0.279096) | |
| nca (0.273748) | |
| ecc (0.23007) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nco (0.161734) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| pla (0.133672) | |
| ute (0.132784) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| eje (0.0988338) |