Ss1.1-Pig3-SRG8012M02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCCAATGACGGACCTGGACATCAAATTTCAGTACCGTGGGAAGGAGTATGGGCAGACC ATGACCGTGAGCAACCCCCAGGGCTGCCGGCTCTTCTACGGGGACCTGGGCCCCATGCCT GACCAGGAGGAGCTCTTTGGTCCTGTCAGCCTGGAGCAGGTCAAGTTCCCAGGTCCGGAG CACATCACCAACGAGAAGCAGAAGCTGTTCACCAGCAAGCTGCTAGATGTCATGGACAGA GGACTGATCCTGGAGGTCAGCGGCCACGCCATTTATGCCATCAGGCTGTGCCAGTGCAAG GTGTACTGGTCTGGGCCATGTGCCCCATCGCTGGTTGCCCCCAACCTGATTGAGAGGCAA AAGAAGGTCAAACTGTTTTGTCTGGAAACGTTCCTTATCGATCTTATCGCCCACCAGAAA GGACAGATAGAGAAGCAGCCACCATTTGAGATCTACTTATGCTTTGGGGAAGAATGGCCA GATGGAAAACCCCTGGAAAGGAAACTCATCTTGGTTCAGGTCATTCCCGTGGTGGCGCGA ATGATCTATGAGATGTTTTCTGGTGATTTTACACGATCCTTTGACAGTGGCAGCGTCCGC CTGCAGATCTCAACTCCCGACATCAAGGATAACATCGTCGCCCAGCTGAAGCAGCTGTAC CGCATCCTCCAAACCCAGGAAAGCTGGCAGCCCATGCAGCCCACCCCTAGCATGCAAATG CCCCCTGCCCTGCCAGCCCAGTAATCACGAATGCCATCTTCTTTTTTTTTTTTTTTTTTA ATTGTACATATTGATATTTTTTATTATTCAGATTTACCCAACTTTTAAACCTTTCTTCTA ACCATATTAGTACTCTGACTCTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCCAATGACGGACCTGGACATCAAATTTCAGTACCGTGGGAAGGAGTATGGGCAGACC ATGACCGTGAGCAACCCCCAGGGCTGCCGGCTCTTCTACGGGGACCTGGGCCCCATGCCT GACCAGGAGGAGCTCTTTGGTCCTGTCAGCCTGGAGCAGGTCAAGTTCCCAGGTCCGGAG CACATCACCAACGAGAAGCAGAAGCTGTTCACCAGCAAGCTGCTAGATGTCATGGACAGA GGACTGATCCTGGAGGTCAGCGGCCACGCCATTTATGCCATCAGGCTGTGCCAGTGCAAG GTGTACTGGTCTGGGCCATGTGCCCCATCGCTGGTTGCCCCCAACCTGATTGAGAGGCAA AAGAAGGTCAAACTGTTTTGTCTGGAAACGTTCCTTATCGATCTTATCGCCCACCAGAAA GGACAGATAGAGAAGCAGCCACCATTTGAGATCTACTTATGCTTTGGGGAAGAATGGCCA GATGGAAAACCCCTGGAAAGGAAACTCATCTTGGTTCAGGTCATTCCCGTGGTGGCGCGA ATGATCTATGAGATGTTTTCTGGTGATTTTACACGATCCTTTGACAGTGGCAGCGTCCGC CTGCAGATCTCAACTCCCGACATCAAGGATAACATCGTCGCCCAGCTGAAGCAGCTGTAC CGCATCCTCCAAACCCAGGAAAGCTGGCAGCCCATGCAGCCCACCCCTAGCATGCAAATG CCCCCTGCCCTGCCAGCCCAGTAATCACGAATGCCATCTTCTTTTTTTTTTTTTTTTTTA ATTGTACATATTGATATTTTTTATTATTCAGATTTACCCAACTTTTAAACCTTTCTTCTA ACCATATTAGTACTCTGACTCTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 84-323, + strand, RNAz p=0.927845 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 84-323, + strand, RNAz p=0.927845 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 5-395, gnl|bosTau2|chr16 (50819440-50819050) | |
| 5-395, gnl|canFam2|chr7 (11409906-11410336) | |
| 5-395, gnl|danRer3|chr22 (3392123-3392543) | |
| 5-395, gnl|dasNov1|scaffold_498 (126534-126963) | |
| 5-395, gnl|echTel1|scaffold_285621 (11040-10611) | |
| 5-395, gnl|fr1|chrUn (46009967-46009567) | |
| 5-395, gnl|galGal2|chr26 (1747735-1748165) | |
| 5-395, gnl|hg17|chr1 (206352206-206352635) | |
| 5-395, gnl|Hg17|chr1 (206352630-206352240) | |
| 5-395, gnl|loxAfr1|scaffold_14212 (10635-11064) | |
| 5-395, gnl|mm7|chr1 (192720481-192720052) | |
| 5-395, gnl|Mm7|chr1 (192720055-192720445) | |
| 5-395, gnl|monDom2|scaffold_13 (12817064-12817491) | |
| 5-395, gnl|oryCun1|scaffold_113080 (14758-15186) | |
| 5-395, gnl|panTro1|chr1 (189967972-189968401) | |
| 5-395, gnl|rheMac2|chr1 (160604317-160603888) | |
| 5-395, gnl|rn3|chr13 (109191100-109190671) | |
| 5-395, gnl|tetNig1|chr11 (5978746-5979151) | |
| 5-395, gnl|xenTro1|scaffold_920 (96457-96049) | |
| 517-864, gnl|bosTau2|chr16 (50817593-50817252) | |
| 517-864, gnl|Hg17|chr1 (206350387-206350034) | |
| 517-864, gnl|Mm7|chr1 (192721898-192722257) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-395, gnl|bosTau2|chr16 (50819440-50819050) | |
| 5-395, gnl|canFam2|chr7 (11409906-11410336) | |
| 5-395, gnl|danRer3|chr22 (3392123-3392543) | |
| 5-395, gnl|dasNov1|scaffold_498 (126534-126963) | |
| 5-395, gnl|echTel1|scaffold_285621 (11040-10611) | |
| 5-395, gnl|fr1|chrUn (46009967-46009567) | |
| 5-395, gnl|galGal2|chr26 (1747735-1748165) | |
| 5-395, gnl|hg17|chr1 (206352206-206352635) | |
| 5-395, gnl|Hg17|chr1 (206352630-206352240) | |
| 5-395, gnl|loxAfr1|scaffold_14212 (10635-11064) | |
| 5-395, gnl|mm7|chr1 (192720481-192720052) | |
| 5-395, gnl|Mm7|chr1 (192720055-192720445) | |
| 5-395, gnl|monDom2|scaffold_13 (12817064-12817491) | |
| 5-395, gnl|oryCun1|scaffold_113080 (14758-15186) | |
| 5-395, gnl|panTro1|chr1 (189967972-189968401) | |
| 5-395, gnl|rheMac2|chr1 (160604317-160603888) | |
| 5-395, gnl|rn3|chr13 (109191100-109190671) | |
| 5-395, gnl|tetNig1|chr11 (5978746-5979151) | |
| 5-395, gnl|xenTro1|scaffold_920 (96457-96049) | |
| 517-864, gnl|bosTau2|chr16 (50817593-50817252) | |
| 517-864, gnl|Hg17|chr1 (206350387-206350034) | |
| 517-864, gnl|Mm7|chr1 (192721898-192722257) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| duo (0.172801) |