Ss1.1-Pig3-SRG8012M08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATCTTTTAAATAGAGTTGATCAAGGAGCTGCAACGGCTCTCAATAGGAAAGAGAACACC AGCAACATCCCTTATAGCAAAAATACTGACTATCCTGAGCTTCACCAGCAAAATGCAGAT TTGACTCATCAGACGGGATCTAAAGCTACTTATATTTCCTCAGCAGCCGATAACATTAGA AATCAAAAAGCCACCATCTTGGCTGGCACCGCAAATGTGAAAGCAGGATCTCGGACGTCA GGGGAGGCGTCCCACCCTGTTGAAAATGCATCTGTTCCTAGGCCTTCATCCCAGTTTGTG CGAAGAAAAAAGTCAGAACCTGATGATGAACTGCTGTTTGATTTTCTTAATAGTTCACAG AAGGAGCCTACTGGAAAAGTGGAAATCAAAAAAGAGAGGGGCAAGACACCTGTCTTTCAG AGTTCTCGGACAGGTGTCCATTCTGTGAACACCGGTGTGCCCACCGTCAAAACCGTTGAG GAGGATCCTGGGAGCCAAGGCCATGAAGCCGCCACTAATTCAGTTTCTGGCCATGAAGGG CAAGATGATTCTTCGAAGGAAAATATATCACCCAACACTGCCTGTGCTGATCACAACCCA ACACCTAATGATGATGGCAAATCACATGAACTGTCTAACCTTCGACTAGAAAATCAACTG CTGAGGAATGAAGTTCAGTCTTTAAATCAAGAAATGGCCTCACTGCTTCAGCGATCCAAG GAAACTCAGGAAGAATTAAACAAAGCAAGAGCACGAGTTGAAAAGTGGAATGTTGACCAT TCAAAGAGTGATCGAATAACTCGAGAACTTCGAGCCCAGGTCGATGACCTGACTGAAGCG GTGGCTGCGAAGGATTCCCAGCTGGCCGTTTTGAAAGTGAGACTCCAGGAAGCTGACCAG CTGTTGAGTGCTCGCACAGAAGCACTGGAAGCCTTACAGAATGAAAAATCACGAATAATG CAGGATCACAGCGAAGGCAGTAGCCTGCAGAATCAGGCTCTACAAACTCTTCAGGAGAGA CTGCATGAAGCAGACGCCAGTCTGAAGAGAGAGCAGGAGAGCTATAAACAAATGCAGAGT GAGTTTGCGGCCCGTCTTAATAAAATGGAAGTAGAGCGTCTGAATTTGGCAGAAGCAGTC ACTCTGGCAGAAAGAAAATACTCAGATGAGAAGAAGAGAGTGGATGAGCTACAGCAGCAG GTCAAAACGCTGAAGTCCAATGTGGAGTCCTCCAAGCAGGAATTAATTGACTACAAGCAA AAAGCCACGAGAATACTCCAGTCTAAAGAAAAGCTGATTAACAGTTTAAAGGAAGGCTCT GGTTTTGAAGGCCTCGATAGCAGTACTGCTAATAGCATGGAACTAGAAGAACTTCGGCAT GAGAAGGAGATGCAAAGGGAGGAAATTCAGAAACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATCTTTTAAATAGAGTTGATCAAGGAGCTGCAACGGCTCTCAATAGGAAAGAGAACACC AGCAACATCCCTTATAGCAAAAATACTGACTATCCTGAGCTTCACCAGCAAAATGCAGAT TTGACTCATCAGACGGGATCTAAAGCTACTTATATTTCCTCAGCAGCCGATAACATTAGA AATCAAAAAGCCACCATCTTGGCTGGCACCGCAAATGTGAAAGCAGGATCTCGGACGTCA GGGGAGGCGTCCCACCCTGTTGAAAATGCATCTGTTCCTAGGCCTTCATCCCAGTTTGTG CGAAGAAAAAAGTCAGAACCTGATGATGAACTGCTGTTTGATTTTCTTAATAGTTCACAG AAGGAGCCTACTGGAAAAGTGGAAATCAAAAAAGAGAGGGGCAAGACACCTGTCTTTCAG AGTTCTCGGACAGGTGTCCATTCTGTGAACACCGGTGTGCCCACCGTCAAAACCGTTGAG GAGGATCCTGGGAGCCAAGGCCATGAAGCCGCCACTAATTCAGTTTCTGGCCATGAAGGG CAAGATGATTCTTCGAAGGAAAATATATCACCCAACACTGCCTGTGCTGATCACAACCCA ACACCTAATGATGATGGCAAATCACATGAACTGTCTAACCTTCGACTAGAAAATCAACTG CTGAGGAATGAAGTTCAGTCTTTAAATCAAGAAATGGCCTCACTGCTTCAGCGATCCAAG GAAACTCAGGAAGAATTAAACAAAGCAAGAGCACGAGTTGAAAAGTGGAATGTTGACCAT TCAAAGAGTGATCGAATAACTCGAGAACTTCGAGCCCAGGTCGATGACCTGACTGAAGCG GTGGCTGCGAAGGATTCCCAGCTGGCCGTTTTGAAAGTGAGACTCCAGGAAGCTGACCAG CTGTTGAGTGCTCGCACAGAAGCACTGGAAGCCTTACAGAATGAAAAATCACGAATAATG CAGGATCACAGCGAAGGCAGTAGCCTGCAGAATCAGGCTCTACAAACTCTTCAGGAGAGA CTGCATGAAGCAGACGCCAGTCTGAAGAGAGAGCAGGAGAGCTATAAACAAATGCAGAGT GAGTTTGCGGCCCGTCTTAATAAAATGGAAGTAGAGCGTCTGAATTTGGCAGAAGCAGTC ACTCTGGCAGAAAGAAAATACTCAGATGAGAAGAAGAGAGTGGATGAGCTACAGCAGCAG GTCAAAACGCTGAAGTCCAATGTGGAGTCCTCCAAGCAGGAATTAATTGACTACAAGCAA AAAGCCACGAGAATACTCCAGTCTAAAGAAAAGCTGATTAACAGTTTAAAGGAAGGCTCT GGTTTTGAAGGCCTCGATAGCAGTACTGCTAATAGCATGGAACTAGAAGAACTTCGGCAT GAGAAGGAGATGCAAAGGGAGGAAATTCAGAAACTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 320-436, + strand, RNAz p=0.755276 | |
| 836-953, - strand, RNAz p=0.734873 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 320-436, + strand, RNAz p=0.755276 | |
| 836-953, - strand, RNAz p=0.734873 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-505, gnl|bosTau2|chr21 (36204203-36203693) | |
| 1-505, gnl|canFam2|chr8 (4874433-4874890) | |
| 1-505, gnl|danRer3|chr13 (34500460-34500921) | |
| 1-505, gnl|dasNov1|scaffold_4862 (7305-6845) | |
| 1-505, gnl|echTel1|scaffold_110756 (1406-970) | |
| 1-505, gnl|fr1|chrUn (262962564-262962064) | |
| 1-505, gnl|galGal2|chr5 (41647806-41648282) | |
| 1-505, gnl|hg17|chr14 (92333530-92333987) | |
| 1-505, gnl|Hg17|chr14 (92333572-92334079) | |
| 1-505, gnl|loxAfr1|scaffold_4017 (34754-34292) | |
| 1-505, gnl|mm7|chr12 (99967316-99967773) | |
| 1-505, gnl|Mm7|chr12 (99967358-99967859) | |
| 1-505, gnl|monDom2|scaffold_8 (30955368-30955822) | |
| 1-505, gnl|oryCun1|scaffold_136337 (5585-6045) | |
| 1-505, gnl|panTro1|chr15 (92736856-92737313) | |
| 1-505, gnl|rheMac2|chr7 (155998059-155998516) | |
| 1-505, gnl|rn3|chr6 (126744061-126744518) | |
| 1-505, gnl|xenTro1|scaffold_22 (3062595-3063052) | |
| 732-953, gnl|bosTau2|chr21 (36197149-36196928) | |
| 732-953, gnl|Hg17|chr14 (92345396-92345617) | |
| 732-953, gnl|Mm7|chr12 (99971462-99971683) | |
| 1075-1281, gnl|bosTau2|chr21 (36194642-36194436) | |
| 1075-1281, gnl|Hg17|chr14 (92347646-92347852) | |
| 1075-1281, gnl|Mm7|chr12 (99974889-99975095) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-505, gnl|bosTau2|chr21 (36204203-36203693) | |
| 1-505, gnl|canFam2|chr8 (4874433-4874890) | |
| 1-505, gnl|danRer3|chr13 (34500460-34500921) | |
| 1-505, gnl|dasNov1|scaffold_4862 (7305-6845) | |
| 1-505, gnl|echTel1|scaffold_110756 (1406-970) | |
| 1-505, gnl|fr1|chrUn (262962564-262962064) | |
| 1-505, gnl|galGal2|chr5 (41647806-41648282) | |
| 1-505, gnl|hg17|chr14 (92333530-92333987) | |
| 1-505, gnl|Hg17|chr14 (92333572-92334079) | |
| 1-505, gnl|loxAfr1|scaffold_4017 (34754-34292) | |
| 1-505, gnl|mm7|chr12 (99967316-99967773) | |
| 1-505, gnl|Mm7|chr12 (99967358-99967859) | |
| 1-505, gnl|monDom2|scaffold_8 (30955368-30955822) | |
| 1-505, gnl|oryCun1|scaffold_136337 (5585-6045) | |
| 1-505, gnl|panTro1|chr15 (92736856-92737313) | |
| 1-505, gnl|rheMac2|chr7 (155998059-155998516) | |
| 1-505, gnl|rn3|chr6 (126744061-126744518) | |
| 1-505, gnl|xenTro1|scaffold_22 (3062595-3063052) | |
| 732-953, gnl|bosTau2|chr21 (36197149-36196928) | |
| 732-953, gnl|Hg17|chr14 (92345396-92345617) | |
| 732-953, gnl|Mm7|chr12 (99971462-99971683) | |
| 1075-1281, gnl|bosTau2|chr21 (36194642-36194436) | |
| 1075-1281, gnl|Hg17|chr14 (92347646-92347852) | |
| 1075-1281, gnl|Mm7|chr12 (99974889-99975095) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| pla (0.133672) | |
| cov (0.132153) |