Non-Coding RNA Search

Ss1.1-Pig3-SRG8012M10.3

Sequence:


               
               ACCAGCTGCATCTCCATGAGAGCTGTGTGCTGTCCCTAAAATTTGCTTATTGTGGTAAAT
GGTTTGTGAGTACTGGAAAAGATAACCTCCTCAATGCTTGGCGGACCCCCTATGGAGCTA
GTATATTCCAGTCCAAAGAGTCCTCGTCCGTGCTCAGCTGTGACATCTCTGTGGATGATA
AGTACATAGTCACTGGCTCAGGGGACAAGAAGGCGACAGTCTATGAAGTCATCTACTGAA
AACATTATGTGGTTTAACGTTTATAGTTGAATTGGGCCAAAATGTTTTGAATTTGTAGGA
ATAGAAACGTTGTAACTTTAAGAAACACAAAAACCTGTTTCCAAGCCTTGACACAAAACA
GTACTTTGCGTCTACAAAGAGGAGGCAACAGCACATCAGCAGGCCACCCGTCTACCAAGA
CCAAATGGAGCGCCAAGGCAGGGTGGACAGAGGGGCAAGGATTGCGGCTTGAGGAATGGA
GCCTGCCGACCAGGGCAGGGTCCATCCTTTTCTTCTGTGTGATCTGCTGAGATCAACTTT
CTGTTCCTTGCGATTCCCTGGCTGCCCACCCTTGGTAGAGCAGTGGTGTCTCCAATGAAA
CTTGTTTCCTGGTTTTGCATCTTGTGAAATGTTTTTTTGTATTTTTGTTGAAGGTTAAAC
ATTTGTATAAATTGTAAATATATTTGGTTTATTACAGTAAAGGCTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAGCTGCATCTCCATGAGAGCTGTGTGCTGTCCCTAAAATTTGCTTATTGTGGTAAAT
GGTTTGTGAGTACTGGAAAAGATAACCTCCTCAATGCTTGGCGGACCCCCTATGGAGCTA
GTATATTCCAGTCCAAAGAGTCCTCGTCCGTGCTCAGCTGTGACATCTCTGTGGATGATA
AGTACATAGTCACTGGCTCAGGGGACAAGAAGGCGACAGTCTATGAAGTCATCTACTGAA
AACATTATGTGGTTTAACGTTTATAGTTGAATTGGGCCAAAATGTTTTGAATTTGTAGGA
ATAGAAACGTTGTAACTTTAAGAAACACAAAAACCTGTTTCCAAGCCTTGACACAAAACA
GTACTTTGCGTCTACAAAGAGGAGGCAACAGCACATCAGCAGGCCACCCGTCTACCAAGA
CCAAATGGAGCGCCAAGGCAGGGTGGACAGAGGGGCAAGGATTGCGGCTTGAGGAATGGA
GCCTGCCGACCAGGGCAGGGTCCATCCTTTTCTTCTGTGTGATCTGCTGAGATCAACTTT
CTGTTCCTTGCGATTCCCTGGCTGCCCACCCTTGGTAGAGCAGTGGTGTCTCCAATGAAA
CTTGTTTCCTGGTTTTGCATCTTGTGAAATGTTTTTTTGTATTTTTGTTGAAGGTTAAAC
ATTTGTATAAATTGTAAATATATTTGGTTTATTACAGTAAAGGCTTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6PDS9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6PDS9_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               166-378, + strand, RNAz p=0.74547

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               166-378, + strand, RNAz p=0.74547

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005077, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005077, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               126-708, gnl|bosTau2|chr13 (35553849-35553264)
               

               
               126-708, gnl|Hg17|chr9 (81428780-81428162)
               

               
               126-708, gnl|Mm7|chr4 (71552095-71551513)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-708, gnl|bosTau2|chr13 (35553849-35553264)
               

               
               126-708, gnl|Hg17|chr9 (81428780-81428162)
               

               
               126-708, gnl|Mm7|chr4 (71552095-71551513)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nep (0.183925)
               

               
               gul (0.177588)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               spc (0.113366)

	126-708, gnl\|bosTau2\|chr13 (35553849-35553264)
	126-708, gnl\|Hg17\|chr9 (81428780-81428162)
	126-708, gnl\|Mm7\|chr4 (71552095-71551513)