Ss1.1-Pig3-SRG8012M16.5
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AACGTGGACATCACAGATAATGAGGGATTCTGATTCATTATTAATTTTATTAATTATATT
TTCTGATAGGAGTCTAAACCTTAGTGGAAAAAACAAGACAAAGCTAAGAGTATGCAGATG
AAAGGGGTGAACAGAAGTATATTTGTTAAATGTGAAACATGAATAGTGTCCTTCTTACCT
AGGTTTACAACTGGTGGACCGCACACCAGGCATTAACCACTTGGTGAGGATTTGGCAAAT
CCACCAAAAAAAAAAAAAAAAAAAAAAAAAAACCACAAACAAGCAAACAAAACCCACATA
CAATTAACCGACATCTCCACCAGCGCTACAGATTTCTTCTTATTCTGATGTTTAATGCAG
ACAATGCTACATTTCTACATGCTGTTTAGAGACAGAAGGTGACCTGCACTGCATCTTGAG
TTTCCTGGCGATGCTTCTTTTGATGACATATATTATACAGTATATATATACATATATTTT
TTTTTTGTTAGAGTTCTAGCCATTTGATTTCTCAGCAGGGTCCTTTCTCAGACATTACTG
CATGCTATATATGGCGTTAGCTGTGTGTTGATCTTCTAAAAGATGATAGAGTTTACTGGT
AATTGTGTAATCAGCTCCTGCCTTTTTTCTTTTCTTGGGTTATTTACATGTCAGAGACAT
TTAGAAAAAGTGAAAAGAGAAACAAAACAAAGCACTAACACCAGGCGCAGCATCTTTTTT
CCAGGTGTGGTTCTCGGAGATGGGGGCTGATGCAGGAGGCCTGGCTTGGACCAACAGCAA
GCGACCGAACCGACTCAGCAGTCTGTAACCACTCGCTTTAGCCCATCATGGGAATCTCTG
ATGCCTTTGTGACCACTGGAGAATTGAATCCTCTCTCGGTTTCTTTTATTTAATTTCCCA
CCTTTGTGTGCGTGTGTATGAAAGAGAAGAAAATGCAGTTTTTAGGTAAACCTTTTATTC
CTCCCCGAAGTCCAGGAGCCAGAGAGGCCTCGGGGAGGGGTCCTGGATGTGGTGAGGGAA
AGTGGGATAAGGGGCTAGGGGAGGGAGGGGGTTGTCTCTGACGTGACATTAAAAAGTGTT
CCATGTCCCTCT
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Blue-coloured subsequences are predicted RNA structures by RNAz
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AACGTGGACATCACAGATAATGAGGGATTCTGATTCATTATTAATTTTATTAATTATATT
TTCTGATAGGAGTCTAAACCTTAGTGGAAAAAACAAGACAAAGCTAAGAGTATGCAGATG
AAAGGGGTGAACAGAAGTATATTTGTTAAATGTGAAACATGAATAGTGTCCTTCTTACCT
AGGTTTACAACTGGTGGACCGCACACCAGGCATTAACCACTTGGTGAGGATTTGGCAAAT
CCACCAAAAAAAAAAAAAAAAAAAAAAAAAAACCACAAACAAGCAAACAAAACCCACATA
CAATTAACCGACATCTCCACCAGCGCTACAGATTTCTTCTTATTCTGATGTTTAATGCAG
ACAATGCTACATTTCTACATGCTGTTTAGAGACAGAAGGTGACCTGCACTGCATCTTGAG
TTTCCTGGCGATGCTTCTTTTGATGACATATATTATACAGTATATATATACATATATTTT
TTTTTTGTTAGAGTTCTAGCCATTTGATTTCTCAGCAGGGTCCTTTCTCAGACATTACTG
CATGCTATATATGGCGTTAGCTGTGTGTTGATCTTCTAAAAGATGATAGAGTTTACTGGT
AATTGTGTAATCAGCTCCTGCCTTTTTTCTTTTCTTGGGTTATTTACATGTCAGAGACAT
TTAGAAAAAGTGAAAAGAGAAACAAAACAAAGCACTAACACCAGGCGCAGCATCTTTTTT
CCAGGTGTGGTTCTCGGAGATGGGGGCTGATGCAGGAGGCCTGGCTTGGACCAACAGCAA
GCGACCGAACCGACTCAGCAGTCTGTAACCACTCGCTTTAGCCCATCATGGGAATCTCTG
ATGCCTTTGTGACCACTGGAGAATTGAATCCTCTCTCGGTTTCTTTTATTTAATTTCCCA
CCTTTGTGTGCGTGTGTATGAAAGAGAAGAAAATGCAGTTTTTAGGTAAACCTTTTATTC
CTCCCCGAAGTCCAGGAGCCAGAGAGGCCTCGGGGAGGGGTCCTGGATGTGGTGAGGGAA
AGTGGGATAAGGGGCTAGGGGAGGGAGGGGGTTGTCTCTGACGTGACATTAAAAAGTGTT
CCATGTCCCTCT
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113-253, + strand, RNAz p=0.989886 |
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392-509, - strand, RNAz p=0.555665 |
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550-767, - strand, RNAz p=0.811301 |
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894-1092, - strand, RNAz p=0.975193 |
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974-1092, + strand, RNAz p=0.733967 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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113-253, + strand, RNAz p=0.989886 |
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392-509, - strand, RNAz p=0.555665 |
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550-767, - strand, RNAz p=0.811301 |
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894-1092, - strand, RNAz p=0.975193 |
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974-1092, + strand, RNAz p=0.733967 |
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737-885, - strand, RNAmicro p=0.999454 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
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737-885, - strand, RNAmicro p=0.999454 |
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125-245, AL533025 Homo sapiens ADULT BRAIN Homo sapiens cDNA clone
(emb|AL533025.2|), blast E-value=4e-26, identity=87.6% |
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125-245, 17000424054259 GRN_EB Homo sapiens cDNA 5', mRNA sequence
(gb|CN370760.1|), blast E-value=7e-25, identity=87.6% |
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115-245, BE04027B2C03 BE04 Normalized and Subtracted bovine embryonic and
(gb|CN441979.1|), blast E-value=3e-33, identity=89.31% |
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115-245, 1241060 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN286906.1|),
blast E-value=3e-33, identity=89.31% |
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115-245, 1460977 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT898463.1|),
blast E-value=3e-33, identity=89.31% |
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115-242, LB02516.CR_K13 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV872043.1|),
blast E-value=7e-25, identity=87.6% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
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125-245, AL533025 Homo sapiens ADULT BRAIN Homo sapiens cDNA clone
(emb|AL533025.2|), blast E-value=4e-26, identity=87.6% |
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125-245, 17000424054259 GRN_EB Homo sapiens cDNA 5', mRNA sequence
(gb|CN370760.1|), blast E-value=7e-25, identity=87.6% |
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115-245, BE04027B2C03 BE04 Normalized and Subtracted bovine embryonic and
(gb|CN441979.1|), blast E-value=3e-33, identity=89.31% |
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115-245, 1241060 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN286906.1|),
blast E-value=3e-33, identity=89.31% |
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115-245, 1460977 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT898463.1|),
blast E-value=3e-33, identity=89.31% |
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115-242, LB02516.CR_K13 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV872043.1|),
blast E-value=7e-25, identity=87.6% |
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3' of NM_016522, + |
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3' of NM_016522, + |
Human gene identifier and UTR site,
human gene reading direction
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3' of NM_016522, + |
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3' of NM_016522, + |
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2-253, gnl|bosTau2|chr29 (26754770-26755028) |
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2-253, gnl|Hg17|chr11 (131710859-131711109) |
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2-253, gnl|Mm7|chr9 (28878362-28878112) |
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277-1092, gnl|bosTau2|chr29 (26755013-26755840) |
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277-1092, gnl|canFam2|chr5 (5726426-5725702) |
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277-1092, gnl|dasNov1|scaffold_35 (242208-241468) |
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277-1092, gnl|echTel1|scaffold_254133 (4434-5166) |
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277-1092, gnl|hg17|chr11 (131710913-131711625) |
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277-1092, gnl|Hg17|chr11 (131711094-131711923) |
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277-1092, gnl|loxAfr1|scaffold_58006 (11257-10543) |
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277-1092, gnl|mm7|chr9 (28878310-28877602) |
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277-1092, gnl|Mm7|chr9 (28878124-28877300) |
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277-1092, gnl|monDom2|scaffold_15 (22355566-22356335) |
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277-1092, gnl|oryCun1|scaffold_210322 (2303-1583) |
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277-1092, gnl|panTro1|chr9 (133862249-133862970) |
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277-1092, gnl|rheMac2|chr14 (130353242-130353951) |
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277-1092, gnl|rn3|chr8 (28586934-28586230) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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2-253, gnl|bosTau2|chr29 (26754770-26755028) |
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2-253, gnl|Hg17|chr11 (131710859-131711109) |
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2-253, gnl|Mm7|chr9 (28878362-28878112) |
| |
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277-1092, gnl|bosTau2|chr29 (26755013-26755840) |
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277-1092, gnl|canFam2|chr5 (5726426-5725702) |
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277-1092, gnl|dasNov1|scaffold_35 (242208-241468) |
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277-1092, gnl|echTel1|scaffold_254133 (4434-5166) |
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277-1092, gnl|hg17|chr11 (131710913-131711625) |
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277-1092, gnl|Hg17|chr11 (131711094-131711923) |
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277-1092, gnl|loxAfr1|scaffold_58006 (11257-10543) |
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277-1092, gnl|mm7|chr9 (28878310-28877602) |
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277-1092, gnl|Mm7|chr9 (28878124-28877300) |
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277-1092, gnl|monDom2|scaffold_15 (22355566-22356335) |
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277-1092, gnl|oryCun1|scaffold_210322 (2303-1583) |
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277-1092, gnl|panTro1|chr9 (133862249-133862970) |
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277-1092, gnl|rheMac2|chr14 (130353242-130353951) |
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277-1092, gnl|rn3|chr8 (28586934-28586230) |
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fhi (0.339155) |
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hyp (0.142837) |
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fhi (0.339155) |
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hyp (0.142837) |
