Non-Coding RNA Search

Ss1.1-Pig3-SRG8012N14.3

Sequence:


               
               GCTTCCACCTGGTGCTGCTGCAGGAGTATTTTGACGAGTCGCTGGTGCTGCTCAAGGACC
TGCTGTGCTGGGAGCTGGAGGACGTGCTCTACTTCAAGCTAAACGCCCGCCGCGCCTCAG
CCGTGCCGCGCCTCTCTGGCGAGCTGTACCGGCGCGCCACCGACTGGAACGTGCTGGACG
CCCGCCTCTACCGCCACTTCAACACCAGCTTCTGGCGCAAGGTGGAGGCGTTCGGCCGGG
AGCGCATGGCCCGAGAGGTGGCCGCCCTGCGACGCGCCAACGAGCGCATGCGCCGCATCT
GCATCGACGGCGGCCACGCGGTGGACGCGGCCGCCATTCAGGACTCGGCCATGCAGCCCT
GGCAGCCGCTGGGCGCGAAGTCCATCCTGGGCTACAACCTCAAGAAGAGCATTGGGCAGC
GGCACGCGCAGCTCTGTCGGCGCATGCTCACGCCCGAGATCCAGTACCTGATGGACCTGG
GCGTCAACCTGTGGGTCACCAAGCTCTGGAAGTTCATCCGGGACTTTCTGCAGTGGTGAC
GCCCACCCACTGAGGAGGGGTGGGCAGGGGCCCGCTGGCCACCTCCGCGGCCCTCCTGGT
GCCACCCCAGTCCCTGGGGTGAGGTGGGGCTGCTGCAGGGGTGCAACCAGCCAGGACTGG
GCCTGCTGCACACAGGGCCCAATCGAGATCAGTATTTGACTAATTATAGTTTTTTAAATT
AAATCCCCTTCCCTCCAAAAAAGATTGTTCTATTTGCAGTCTCCCCTTAAAGGGGAGACA
TCAGAAGTAAAATAATTTGATGTGTTTTTGTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTCCACCTGGTGCTGCTGCAGGAGTATTTTGACGAGTCGCTGGTGCTGCTCAAGGACC
TGCTGTGCTGGGAGCTGGAGGACGTGCTCTACTTCAAGCTAAACGCCCGCCGCGCCTCAG
CCGTGCCGCGCCTCTCTGGCGAGCTGTACCGGCGCGCCACCGACTGGAACGTGCTGGACG
CCCGCCTCTACCGCCACTTCAACACCAGCTTCTGGCGCAAGGTGGAGGCGTTCGGCCGGG
AGCGCATGGCCCGAGAGGTGGCCGCCCTGCGACGCGCCAACGAGCGCATGCGCCGCATCT
GCATCGACGGCGGCCACGCGGTGGACGCGGCCGCCATTCAGGACTCGGCCATGCAGCCCT
GGCAGCCGCTGGGCGCGAAGTCCATCCTGGGCTACAACCTCAAGAAGAGCATTGGGCAGC
GGCACGCGCAGCTCTGTCGGCGCATGCTCACGCCCGAGATCCAGTACCTGATGGACCTGG
GCGTCAACCTGTGGGTCACCAAGCTCTGGAAGTTCATCCGGGACTTTCTGCAGTGGTGAC
GCCCACCCACTGAGGAGGGGTGGGCAGGGGCCCGCTGGCCACCTCCGCGGCCCTCCTGGT
GCCACCCCAGTCCCTGGGGTGAGGTGGGGCTGCTGCAGGGGTGCAACCAGCCAGGACTGG
GCCTGCTGCACACAGGGCCCAATCGAGATCAGTATTTGACTAATTATAGTTTTTTAAATT
AAATCCCCTTCCCTCCAAAAAAGATTGTTCTATTTGCAGTCTCCCCTTAAAGGGGAGACA
TCAGAAGTAAAATAATTTGATGTGTTTTTGTTAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               241-360, - strand, RNAz p=0.52428
               

               
               481-570, + strand, RNAz p=0.983687
               

               
               678-814, - strand, RNAz p=0.999983

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               241-360, - strand, RNAz p=0.52428
               

               
               481-570, + strand, RNAz p=0.983687
               

               
               678-814, - strand, RNAz p=0.999983

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               609-690, + strand, RNAmicro p=0.994242

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               609-690, + strand, RNAmicro p=0.994242

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               685-803, CT020012B10A09 Equine Articular Cartilage cDNA Library Equus 
(gb|CX595872.1|), blast E-value=1e-26, identity=89.17%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               685-803, CT020012B10A09 Equine Articular Cartilage cDNA Library Equus 
(gb|CX595872.1|), blast E-value=1e-26, identity=89.17%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-814, gnl|bosTau2|chr17 (42686824-42685988)
               

               
               2-814, gnl|Hg17|chr22 (29276031-29275176)
               

               
               2-814, gnl|Mm7|chr11 (3950532-3951401)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-814, gnl|bosTau2|chr17 (42686824-42685988)
               

               
               2-814, gnl|Hg17|chr22 (29276031-29275176)
               

               
               2-814, gnl|Mm7|chr11 (3950532-3951401)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nje (0.16592)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nje (0.16592)

	241-360, - strand, RNAz p=0.52428
	481-570, + strand, RNAz p=0.983687
	678-814, - strand, RNAz p=0.999983

	2-814, gnl\|bosTau2\|chr17 (42686824-42685988)
	2-814, gnl\|Hg17\|chr22 (29276031-29275176)
	2-814, gnl\|Mm7\|chr11 (3950532-3951401)