Non-Coding RNA Search

Ss1.1-Pig3-SRG8013A14.3

Sequence:


               
               TGTCCACAGTGTCCCATAGAGCGCTGCTCCTCTGTCACACGTGTGCTGTCGCACGTGATG
TGGAAAGAGGTCGAGGCTGTGCAGTCACCAGCTTTCTGCACTGCAGTGCCTCTGTGCTTT
TGTATGTTGTGACTTTTCTGCCCTGACACACCCACACACACACAGCATCCCTAAGGCTCA
GACGTGCTTCAGGCAGCAAGGCCTCAGTGAGACGTCGGTTATGTCCCAAACTCATCTAGT
TCTGCCAGGTGTCCTGTTTGAAAACATCTTCCATCTAATCAGATTTTGAAAGGCTAGCTC
TTGGTGTGTCTGCCTGAGCCTCGTGACAGATCTACATTGTAAGCGCACTTACACTGCAAA
ATTGTGTTGCTTCAAAAACCAGCATTAATACTTGTTGCTCAATCAGTTTTACATTTTCTA
ATATCCACTTAGAGTCTTGTTCTACTTTTAAAACATCTTTCTTAACATATTAAACTGAGT
CACACTCGTGTCCTGCACTTTCATTCACTACCACCCGGTCCCTTTGCTATAAAGCGCGAA
CATTCCTTTCCCTTCGTCCATGTTCCAAGTGCGTGAGACGGGACTACCAGCAGTGTTTTC
ATTGAAAAGTACCTTGTGGCCATAGGAATCAAGCTTTAGCTCTCCGTGTTTCAAGTTTGT
TTTTTTGAAGGGAAGGAGGAAACTGTTCACCTGGAAGAAATGCAGAATTTGGCTCTGTGA
CAGTTTGGTTTCAGAGACGTTAACAGCTGTATTGCATGTATTACTTTGTATTGCGTGCTC
ACTTTAAGCCAGGCGTCGGCCTCAACTATTTATAATCCTCCTAGCAACCCTATAAGACAT
GGGCTGGGCAGTGACTATTTCTGCGGGCCACATAAGGTCTCCGTCACGTATTCTTCTTGT
TTTGAAAAATGTCAGAAAACGTTCTTAGCTCGAGGGCTGTAAAGAAACAGGCCACAGCTG
GATCAGGCTGTAGTCTGCTGACCCCTGCTGAGGTGTAGGCCGAGCGTCCCACTGAGCGGA
CTGCTCACAGGTGGGGAACCTGGCCGTGAACCCAGGGATCCGACCTCCGAGCTCCAGTCC
CCACAACCACACTGCCGACAACCTCAGCAACTACCTCGCAGATGTTCTTACCCTTTGCCT
CGCCGCAACCCTCCCTTCCCACATTTCGGTTCTGAGAATTTAATAAGAGTCTTGAGAGAA
AAGAACATTCCTTCTTTGGTGAATAAAATTGATGTGCAATTACAGAAGAAATGTATTATG
GCCATTTAGCAATGATTGTATTAGGGTAATGCTAGTTCTGTAATAAATAGACCCAAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCCACAGTGTCCCATAGAGCGCTGCTCCTCTGTCACACGTGTGCTGTCGCACGTGATG
TGGAAAGAGGTCGAGGCTGTGCAGTCACCAGCTTTCTGCACTGCAGTGCCTCTGTGCTTT
TGTATGTTGTGACTTTTCTGCCCTGACACACCCACACACACACAGCATCCCTAAGGCTCA
GACGTGCTTCAGGCAGCAAGGCCTCAGTGAGACGTCGGTTATGTCCCAAACTCATCTAGT
TCTGCCAGGTGTCCTGTTTGAAAACATCTTCCATCTAATCAGATTTTGAAAGGCTAGCTC
TTGGTGTGTCTGCCTGAGCCTCGTGACAGATCTACATTGTAAGCGCACTTACACTGCAAA
ATTGTGTTGCTTCAAAAACCAGCATTAATACTTGTTGCTCAATCAGTTTTACATTTTCTA
ATATCCACTTAGAGTCTTGTTCTACTTTTAAAACATCTTTCTTAACATATTAAACTGAGT
CACACTCGTGTCCTGCACTTTCATTCACTACCACCCGGTCCCTTTGCTATAAAGCGCGAA
CATTCCTTTCCCTTCGTCCATGTTCCAAGTGCGTGAGACGGGACTACCAGCAGTGTTTTC
ATTGAAAAGTACCTTGTGGCCATAGGAATCAAGCTTTAGCTCTCCGTGTTTCAAGTTTGT
TTTTTTGAAGGGAAGGAGGAAACTGTTCACCTGGAAGAAATGCAGAATTTGGCTCTGTGA
CAGTTTGGTTTCAGAGACGTTAACAGCTGTATTGCATGTATTACTTTGTATTGCGTGCTC
ACTTTAAGCCAGGCGTCGGCCTCAACTATTTATAATCCTCCTAGCAACCCTATAAGACAT
GGGCTGGGCAGTGACTATTTCTGCGGGCCACATAAGGTCTCCGTCACGTATTCTTCTTGT
TTTGAAAAATGTCAGAAAACGTTCTTAGCTCGAGGGCTGTAAAGAAACAGGCCACAGCTG
GATCAGGCTGTAGTCTGCTGACCCCTGCTGAGGTGTAGGCCGAGCGTCCCACTGAGCGGA
CTGCTCACAGGTGGGGAACCTGGCCGTGAACCCAGGGATCCGACCTCCGAGCTCCAGTCC
CCACAACCACACTGCCGACAACCTCAGCAACTACCTCGCAGATGTTCTTACCCTTTGCCT
CGCCGCAACCCTCCCTTCCCACATTTCGGTTCTGAGAATTTAATAAGAGTCTTGAGAGAA
AAGAACATTCCTTCTTTGGTGAATAAAATTGATGTGCAATTACAGAAGAAATGTATTATG
GCCATTTAGCAATGATTGTATTAGGGTAATGCTAGTTCTGTAATAAATAGACCCAAAAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               899-1000, + strand, RNAz p=0.669388

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               899-1000, + strand, RNAz p=0.669388

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               221-1320, gnl|bosTau2|chr17 (33239209-33240301)
               

               
               221-1320, gnl|Hg17|chr12 (116043650-116042519)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               221-1320, gnl|bosTau2|chr17 (33239209-33240301)
               

               
               221-1320, gnl|Hg17|chr12 (116043650-116042519)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

	221-1320, gnl\|bosTau2\|chr17 (33239209-33240301)
	221-1320, gnl\|Hg17\|chr12 (116043650-116042519)