Ss1.1-Pig3-SRG8013E17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCTCCCGGCGAGCGGTGCGCAGAAACCTCGAACCGGTGGAGCCCACTCGTAACCTGGGG CCCACAAGGCCGCGAAGACAGTACCGTTTTCTCAGCGGCGGACTGCTGCAGTAAGAATGT CTTTCCCCCCTCATTTGAATCGCCCTCCCATGGGAATCCCAGCACTCCCACCAGGGATCC CACCCCCACAGTTTCCTGGCTTTCCACCACCTGTACCTCCAGGGACCCCAATGATTCCTG TACCAATGAGCATTATGGCACCTGCTCCAACTGTCTTAGTACCTACTGTGTCCATGGTTG GAAAGCATTTGGGAGCACGAAAGGATCATCCAGGCTTAAAGACTAAAGAAAATGATGAAA ACTGTGGTCCTACCACTACAGTTTTTGTTGGCAATATTTCAGAGAAAGCCTCAGATATGC TTATAAGACAACTCCTTGCTAAATGTGGATTGGTTTTGAGCTGGAAGAGAGTACAAGGTG CATCTGGAAAACTTCAAGCCTTTGGATTCTGTGAGTATAAGGAGCCTGAATCTACCCTCC GTGCACTCAGGTTATTGCATGACCTGCAGATTGGAGAGAAGAAGCTACTTGTTAAAGTTG ATGCAAAGACAAAGGCACAACTGGATGAATGGAAAGCAAAGAAAAAAGCTTCTAATGGGA ATGCCAGGCCAGAAACTGTCACTAATGATGATGAAGAAGCCTTAGATGAAGAAACAAAGA GAAGAGATCAGATGATCAAAGGGGCCATTGAAGTTTTAATACGTGAATACTCCAGCGAGC TCAATGCCCCCTCACAGGAATCTGACTCTCACCCCAGGAAGAAGAAGAAGGAAAAGAAGG AGGACATTTTCCGCAGATTCCCAGTGGCCCCTCTGATCCCTTATCCACTCATCACTAAGG AGGATATAAATGCCATAGAAATGGAAGAAGACAAAAGAGACCTGATATCCCGAGAGATCA GCAAATTCAGAGACACACACAAGGTAGTATTCTTGTTTTTTCACTTGCTACCAATCTAGA CTTTTTACAGAATCCAAAGCAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCTCCCGGCGAGCGGTGCGCAGAAACCTCGAACCGGTGGAGCCCACTCGTAACCTGGGG CCCACAAGGCCGCGAAGACAGTACCGTTTTCTCAGCGGCGGACTGCTGCAGTAAGAATGT CTTTCCCCCCTCATTTGAATCGCCCTCCCATGGGAATCCCAGCACTCCCACCAGGGATCC CACCCCCACAGTTTCCTGGCTTTCCACCACCTGTACCTCCAGGGACCCCAATGATTCCTG TACCAATGAGCATTATGGCACCTGCTCCAACTGTCTTAGTACCTACTGTGTCCATGGTTG GAAAGCATTTGGGAGCACGAAAGGATCATCCAGGCTTAAAGACTAAAGAAAATGATGAAA ACTGTGGTCCTACCACTACAGTTTTTGTTGGCAATATTTCAGAGAAAGCCTCAGATATGC TTATAAGACAACTCCTTGCTAAATGTGGATTGGTTTTGAGCTGGAAGAGAGTACAAGGTG CATCTGGAAAACTTCAAGCCTTTGGATTCTGTGAGTATAAGGAGCCTGAATCTACCCTCC GTGCACTCAGGTTATTGCATGACCTGCAGATTGGAGAGAAGAAGCTACTTGTTAAAGTTG ATGCAAAGACAAAGGCACAACTGGATGAATGGAAAGCAAAGAAAAAAGCTTCTAATGGGA ATGCCAGGCCAGAAACTGTCACTAATGATGATGAAGAAGCCTTAGATGAAGAAACAAAGA GAAGAGATCAGATGATCAAAGGGGCCATTGAAGTTTTAATACGTGAATACTCCAGCGAGC TCAATGCCCCCTCACAGGAATCTGACTCTCACCCCAGGAAGAAGAAGAAGGAAAAGAAGG AGGACATTTTCCGCAGATTCCCAGTGGCCCCTCTGATCCCTTATCCACTCATCACTAAGG AGGATATAAATGCCATAGAAATGGAAGAAGACAAAAGAGACCTGATATCCCGAGAGATCA GCAAATTCAGAGACACACACAAGGTAGTATTCTTGTTTTTTCACTTGCTACCAATCTAGA CTTTTTACAGAATCCAAAGCAAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 101-208, - strand, RNAz p=0.760291 | |
| 693-812, - strand, RNAz p=0.826431 | |
| 698-845, + strand, RNAz p=0.958537 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 101-208, - strand, RNAz p=0.760291 | |
| 693-812, - strand, RNAz p=0.826431 | |
| 698-845, + strand, RNAz p=0.958537 |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 101-223, gnl|bosTau2|chr10 (59587835-59587957) | |
| 101-223, gnl|canFam2|chr8 (49475963-49476123) | |
| 101-223, gnl|danRer3|chr1 (30675301-30675471) | |
| 101-223, gnl|dasNov1|scaffold_26290 (7278-7438) | |
| 101-223, gnl|echTel1|scaffold_294999 (9069-9228) | |
| 101-223, gnl|fr1|chrUn (278843271-278843418) | |
| 101-223, gnl|galGal2|chr5 (23673560-23673398) | |
| 101-223, gnl|hg17|chr14 (72608057-72608218) | |
| 101-223, gnl|Hg17|chr14 (72608087-72608209) | |
| 101-223, gnl|mm7|chr12 (81638639-81638796) | |
| 101-223, gnl|Mm7|chr12 (81638665-81638787) | |
| 101-223, gnl|monDom2|scaffold_8 (62169105-62168937) | |
| 101-223, gnl|oryCun1|scaffold_183859 (12136-12296) | |
| 101-223, gnl|panTro1|chr15 (72386145-72386306) | |
| 101-223, gnl|rheMac2|chr7 (136183828-136183989) | |
| 101-223, gnl|rn3|chr6 (107600051-107600208) | |
| 101-223, gnl|xenTro1|scaffold_218 (1671406-1671565) | |
| 273-440, gnl|bosTau2|chr10 (59593370-59593537) | |
| 273-440, gnl|canFam2|chr8 (49484653-49484837) | |
| 273-440, gnl|danRer3|chr1 (30679854-30680038) | |
| 273-440, gnl|dasNov1|scaffold_26290 (14099-14283) | |
| 273-440, gnl|echTel1|scaffold_88256 (779-963) | |
| 273-440, gnl|fr1|chrUn (228405080-228405255) | |
| 273-440, gnl|galGal2|chr5 (23668641-23668451) | |
| 273-440, gnl|hg17|chr14 (72613819-72614003) | |
| 273-440, gnl|Hg17|chr14 (72613830-72613997) | |
| 273-440, gnl|loxAfr1|scaffold_69992 (3727-3543) | |
| 273-440, gnl|mm7|chr12 (81642163-81642347) | |
| 273-440, gnl|Mm7|chr12 (81642174-81642341) | |
| 273-440, gnl|monDom2|scaffold_8 (62160285-62160101) | |
| 273-440, gnl|oryCun1|scaffold_182860 (29039-28855) | |
| 273-440, gnl|panTro1|chr15 (72391914-72392098) | |
| 273-440, gnl|rheMac2|chr7 (136191024-136191208) | |
| 273-440, gnl|rn3|chr6 (107605086-107605270) | |
| 273-440, gnl|tetNig1|chr14 (2288126-2288285) | |
| 273-440, gnl|xenTro1|scaffold_218 (1674207-1674394) | |
| 659-845, gnl|bosTau2|chr10 (59606783-59606969) | |
| 659-845, gnl|canFam2|chr8 (49502114-49502304) | |
| 659-845, gnl|danRer3|chr1 (30689770-30689958) | |
| 659-845, gnl|dasNov1|scaffold_13237 (80929-80739) | |
| 659-845, gnl|echTel1|scaffold_294999 (26558-26748) | |
| 659-845, gnl|fr1|chrUn (228406045-228406240) | |
| 659-845, gnl|galGal2|chr5 (23663902-23663715) | |
| 659-845, gnl|hg17|chr14 (72633376-72633566) | |
| 659-845, gnl|Hg17|chr14 (72633375-72633561) | |
| 659-845, gnl|loxAfr1|scaffold_17686 (3482-3672) | |
| 659-845, gnl|mm7|chr12 (81655460-81655650) | |
| 659-845, gnl|Mm7|chr12 (81655459-81655645) | |
| 659-845, gnl|monDom2|scaffold_8 (62154941-62154754) | |
| 659-845, gnl|oryCun1|scaffold_182860 (15261-15071) | |
| 659-845, gnl|panTro1|chr15 (72411729-72411919) | |
| 659-845, gnl|rheMac2|chr7 (136212214-136212404) | |
| 659-845, gnl|rn3|chr10 (10378216-10378402) | |
| 659-845, gnl|tetNig1|chr14 (2288850-2289045) | |
| 659-845, gnl|xenTro1|scaffold_218 (1675566-1675759) | |
| 898-1043, gnl|bosTau2|chr10 (59608216-59608361) | |
| 898-1043, gnl|Hg17|chr14 (72636126-72636271) | |
| 898-1043, gnl|Mm7|chr12 (81656630-81656775) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 101-223, gnl|bosTau2|chr10 (59587835-59587957) | |
| 101-223, gnl|canFam2|chr8 (49475963-49476123) | |
| 101-223, gnl|danRer3|chr1 (30675301-30675471) | |
| 101-223, gnl|dasNov1|scaffold_26290 (7278-7438) | |
| 101-223, gnl|echTel1|scaffold_294999 (9069-9228) | |
| 101-223, gnl|fr1|chrUn (278843271-278843418) | |
| 101-223, gnl|galGal2|chr5 (23673560-23673398) | |
| 101-223, gnl|hg17|chr14 (72608057-72608218) | |
| 101-223, gnl|Hg17|chr14 (72608087-72608209) | |
| 101-223, gnl|mm7|chr12 (81638639-81638796) | |
| 101-223, gnl|Mm7|chr12 (81638665-81638787) | |
| 101-223, gnl|monDom2|scaffold_8 (62169105-62168937) | |
| 101-223, gnl|oryCun1|scaffold_183859 (12136-12296) | |
| 101-223, gnl|panTro1|chr15 (72386145-72386306) | |
| 101-223, gnl|rheMac2|chr7 (136183828-136183989) | |
| 101-223, gnl|rn3|chr6 (107600051-107600208) | |
| 101-223, gnl|xenTro1|scaffold_218 (1671406-1671565) | |
| 273-440, gnl|bosTau2|chr10 (59593370-59593537) | |
| 273-440, gnl|canFam2|chr8 (49484653-49484837) | |
| 273-440, gnl|danRer3|chr1 (30679854-30680038) | |
| 273-440, gnl|dasNov1|scaffold_26290 (14099-14283) | |
| 273-440, gnl|echTel1|scaffold_88256 (779-963) | |
| 273-440, gnl|fr1|chrUn (228405080-228405255) | |
| 273-440, gnl|galGal2|chr5 (23668641-23668451) | |
| 273-440, gnl|hg17|chr14 (72613819-72614003) | |
| 273-440, gnl|Hg17|chr14 (72613830-72613997) | |
| 273-440, gnl|loxAfr1|scaffold_69992 (3727-3543) | |
| 273-440, gnl|mm7|chr12 (81642163-81642347) | |
| 273-440, gnl|Mm7|chr12 (81642174-81642341) | |
| 273-440, gnl|monDom2|scaffold_8 (62160285-62160101) | |
| 273-440, gnl|oryCun1|scaffold_182860 (29039-28855) | |
| 273-440, gnl|panTro1|chr15 (72391914-72392098) | |
| 273-440, gnl|rheMac2|chr7 (136191024-136191208) | |
| 273-440, gnl|rn3|chr6 (107605086-107605270) | |
| 273-440, gnl|tetNig1|chr14 (2288126-2288285) | |
| 273-440, gnl|xenTro1|scaffold_218 (1674207-1674394) | |
| 659-845, gnl|bosTau2|chr10 (59606783-59606969) | |
| 659-845, gnl|canFam2|chr8 (49502114-49502304) | |
| 659-845, gnl|danRer3|chr1 (30689770-30689958) | |
| 659-845, gnl|dasNov1|scaffold_13237 (80929-80739) | |
| 659-845, gnl|echTel1|scaffold_294999 (26558-26748) | |
| 659-845, gnl|fr1|chrUn (228406045-228406240) | |
| 659-845, gnl|galGal2|chr5 (23663902-23663715) | |
| 659-845, gnl|hg17|chr14 (72633376-72633566) | |
| 659-845, gnl|Hg17|chr14 (72633375-72633561) | |
| 659-845, gnl|loxAfr1|scaffold_17686 (3482-3672) | |
| 659-845, gnl|mm7|chr12 (81655460-81655650) | |
| 659-845, gnl|Mm7|chr12 (81655459-81655645) | |
| 659-845, gnl|monDom2|scaffold_8 (62154941-62154754) | |
| 659-845, gnl|oryCun1|scaffold_182860 (15261-15071) | |
| 659-845, gnl|panTro1|chr15 (72411729-72411919) | |
| 659-845, gnl|rheMac2|chr7 (136212214-136212404) | |
| 659-845, gnl|rn3|chr10 (10378216-10378402) | |
| 659-845, gnl|tetNig1|chr14 (2288850-2289045) | |
| 659-845, gnl|xenTro1|scaffold_218 (1675566-1675759) | |
| 898-1043, gnl|bosTau2|chr10 (59608216-59608361) | |
| 898-1043, gnl|Hg17|chr14 (72636126-72636271) | |
| 898-1043, gnl|Mm7|chr12 (81656630-81656775) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.339847) | |
| fhi (0.169578) |