Non-Coding RNA Search

Ss1.1-Pig3-SRG8013E20.3

Sequence:


               
               CGATTCCATCCCTTCTCAGGTACCTAGAAACAGTCCCCCTTAAGCAACTGGAATACTTTT
GCTCTAAGTGGAATATATTAGAGAAGAAGCTGGAGAGGAGCACAGAGTCTTCCCTTGCAA
GTAGTTTAATGGAACATGTTAGTATTTGGTCTGTCTAGGACTTGCTGTGTTCATAGCAAA
TCATGTAACATTTATTTTATCTGGTTCTGTATGGTATGTGTATATATATATACATATTTA
ATATGTATCCGTATGTTCTCTGTGCGTATATATGTATACTGTACCCCGATATACATGCAG
TCTCCTCTTGATTATCAGCAAGACGGTAGGCCCGCACCAGACTGTTTCTTCCTGTTAGCT
TAATCTGCATGTCACCCGTTACTCTGTGAAGCCTCTTTCTTATCTGGAGCCACAGTCTTT
CCTATTCTCAGTTCATCTCAGTCCCCAGGAAAGGCCCTGGACATCTGTCCCTTTCCACTT
GCCTTTCACCAGGGACTATGTGAGCCAGAAAGACAGCTTTTGAGAAAGATGGCTGCTTCC
TCCAGAGTTGAGGCTTCTGGGACTGAATGATGATGGGACCCTTTCTGAGGCGTTCCAGAA
GGCAGCCCCTGGAGCAGCTGTGCTCATGGGCTTGCTGGGGGGAAAAAAATCCAGCTCTTG
TGGGAAACGGGGCTGCACAATTTGCTTCACTTCCTCGGCTGGAATGTCGTGAAGCCTCTG
AGGATCTGATGTGCAGACAGGGTACAGTTGTGTGTTTCCCCGGGGGCTTTGTATCGGCAT
TCCTGTTCCCCGTTGCTCGCCCAGATAATCAAAACCTGACTGTTTCTTGCCACTGGATTC
TGGAAGCCTTGCCCTTTCAACTGGATGTATGTTTGTTTCTGCTGCTGTGAAACCCAAAAG
TAAAAGTAGGCTTTAATTTAAAATTGTTTAATTCTATTGATAAATATTTATTGTAATAAA
AATAAAGAGTAAATAATTTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGATTCCATCCCTTCTCAGGTACCTAGAAACAGTCCCCCTTAAGCAACTGGAATACTTTT
GCTCTAAGTGGAATATATTAGAGAAGAAGCTGGAGAGGAGCACAGAGTCTTCCCTTGCAA
GTAGTTTAATGGAACATGTTAGTATTTGGTCTGTCTAGGACTTGCTGTGTTCATAGCAAA
TCATGTAACATTTATTTTATCTGGTTCTGTATGGTATGTGTATATATATATACATATTTA
ATATGTATCCGTATGTTCTCTGTGCGTATATATGTATACTGTACCCCGATATACATGCAG
TCTCCTCTTGATTATCAGCAAGACGGTAGGCCCGCACCAGACTGTTTCTTCCTGTTAGCT
TAATCTGCATGTCACCCGTTACTCTGTGAAGCCTCTTTCTTATCTGGAGCCACAGTCTTT
CCTATTCTCAGTTCATCTCAGTCCCCAGGAAAGGCCCTGGACATCTGTCCCTTTCCACTT
GCCTTTCACCAGGGACTATGTGAGCCAGAAAGACAGCTTTTGAGAAAGATGGCTGCTTCC
TCCAGAGTTGAGGCTTCTGGGACTGAATGATGATGGGACCCTTTCTGAGGCGTTCCAGAA
GGCAGCCCCTGGAGCAGCTGTGCTCATGGGCTTGCTGGGGGGAAAAAAATCCAGCTCTTG
TGGGAAACGGGGCTGCACAATTTGCTTCACTTCCTCGGCTGGAATGTCGTGAAGCCTCTG
AGGATCTGATGTGCAGACAGGGTACAGTTGTGTGTTTCCCCGGGGGCTTTGTATCGGCAT
TCCTGTTCCCCGTTGCTCGCCCAGATAATCAAAACCTGACTGTTTCTTGCCACTGGATTC
TGGAAGCCTTGCCCTTTCAACTGGATGTATGTTTGTTTCTGCTGCTGTGAAACCCAAAAG
TAAAAGTAGGCTTTAATTTAAAATTGTTTAATTCTATTGATAAATATTTATTGTAATAAA
AATAAAGAGTAAATAATTTTTAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               191-310, + strand, RNAz p=0.991515

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               191-310, + strand, RNAz p=0.991515

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-984, gnl|bosTau2|chr11 (54854760-54855732)
               

               
               4-984, gnl|Hg17|chr2 (26529450-26530395)
               

               
               4-984, gnl|Mm7|chr5 (29304253-29305098)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-984, gnl|bosTau2|chr11 (54854760-54855732)
               

               
               4-984, gnl|Hg17|chr2 (26529450-26530395)
               

               
               4-984, gnl|Mm7|chr5 (29304253-29305098)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fbs (0.350693)
               

               
               fce (0.271592)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               med (0.116252)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               fce (0.271592)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               med (0.116252)

	4-984, gnl\|bosTau2\|chr11 (54854760-54855732)
	4-984, gnl\|Hg17\|chr2 (26529450-26530395)
	4-984, gnl\|Mm7\|chr5 (29304253-29305098)

	fbs (0.350693)
	fce (0.271592)
	fty (0.17584)
	sin (0.174948)
	cje (0.165235)
	fat (0.147427)
	hlv (0.139256)
	eep (0.122564)
	clu (0.119646)
	med (0.116252)