Ss1.1-Pig3-SRG8013F13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGCGCGCACCCCGCGCCCCAGCCCGGCCGCCGCGCCGCCGCCTCCCGGTAGGTCCGCC GGCCGCCGCGCCCGGCTGCCCCCAGGATGAACATCATGGACTTCAACGTGAAGAAGCTGG CGGCCGACGCGGGCACCTTCCTCAGCCGCGCAGTGCAGTTCACAGAAGAAAAGCTTGGCC AGGCAGAGAAGACAGAATTGGATGCCCACTTAGAGAACCTCCTTAGCAAAGCTGAATGTA CCAAAATATGGACAGAAAAAATAATGAAACAAACTGAAGTGTTATTGCAGCCAAATCCAA ATGCCAGGATAGAAGAATTTGTTTATGAGAAACTGGATAGAAAAGCTCCAAGTCGTCTGA ACAACCCAGAACTTTTGGGACAATATATGATTGATGCAGGGACCGAGTTCGGCCCTGGAA CAGCTTATGGTAATGCCCTTATTAAATGTGGAGAAACACAAAAACGAATTGGAACAGCAG ACAGAGAACTGATACAAACATCAGCCTTAAATTTTCTCACTCCTTTAAGAAACTTTATAG AAGGAGATTACAAAACAATTGCTAAAGAAAGGAAACTATTACAGAATAAAAGATTGGATT TGGATGCTGCCAAAACCAGACTAAAAAAGGCAAAAGCTGCAGAAACTAGAGCTTCATCTG AACAGGAATTAAGAATAACTCAAAGTGAATTTGATCGTCAGGCAGAGATTACCAGGCTTC TTCTGGAGGGAATCAGCAGTACACATGCCCATCACCTCCGCTGCCTGAATGACTTTGTAG AAGCACAGATGACCTACTATGCGCAGTGCTACCAGTACATGTTAGACCTCCAGAAACAGC TGGGAAGTTTTCCATCAAATTATCATTGTAACAACAACCAGACTTCCGTGGCACCTGTGC CATCTGCCTCATCAAATGCGATTGGCTCTTCTGCCTTGACTTCCACAAGTGGCCTAGGAC TCACCTCTTCTTCCAACCTCCCTGACCTCAAGGAGTGCGTTGGCAGCAGGAAGGCCAGGG TTCTGTACGATTACGATGCTGCGAACAGTACTGAGTTGTCCCTGCTGGCGGACGAGGTGA TCAGTGTTTACAGTGTTGCTGGAATGGATTCCGACTGGCTCATGGGGGAGAGGGGGAACC AGAAGGGCAGGGTGCCCATCACCTACTTAGAACTGCTCAACTGATAGGTGGACGGCGACA GACACCGTATTTATACACACCTAACGCTTAGTACAGCAGGCTTAACGCTCTTCCGTGTTA ATGTCTTAAGCGACTGAAAAGAAAAACCAGCTCTCAGAAACTGGCCTTTCTGCCAGTAAA ACTGCATGGTAAATTTTTCGTTGCAGAATTTATGTTAGAGCTTTCATGCCAAGAGTGTTT TCTTACAACATTCTCTTTCTACTGAAGTTTCACTAATAAGTAGCTTCTCCTTTCGAGCCC CACCTTAAAACTGTTTTCTACTGAATTTTTCATTAATGGCAAGCTTTTTCTTTTATGTAA AATAAATTTATTGTGAATTGAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGCGCGCACCCCGCGCCCCAGCCCGGCCGCCGCGCCGCCGCCTCCCGGTAGGTCCGCC GGCCGCCGCGCCCGGCTGCCCCCAGGATGAACATCATGGACTTCAACGTGAAGAAGCTGG CGGCCGACGCGGGCACCTTCCTCAGCCGCGCAGTGCAGTTCACAGAAGAAAAGCTTGGCC AGGCAGAGAAGACAGAATTGGATGCCCACTTAGAGAACCTCCTTAGCAAAGCTGAATGTA CCAAAATATGGACAGAAAAAATAATGAAACAAACTGAAGTGTTATTGCAGCCAAATCCAA ATGCCAGGATAGAAGAATTTGTTTATGAGAAACTGGATAGAAAAGCTCCAAGTCGTCTGA ACAACCCAGAACTTTTGGGACAATATATGATTGATGCAGGGACCGAGTTCGGCCCTGGAA CAGCTTATGGTAATGCCCTTATTAAATGTGGAGAAACACAAAAACGAATTGGAACAGCAG ACAGAGAACTGATACAAACATCAGCCTTAAATTTTCTCACTCCTTTAAGAAACTTTATAG AAGGAGATTACAAAACAATTGCTAAAGAAAGGAAACTATTACAGAATAAAAGATTGGATT TGGATGCTGCCAAAACCAGACTAAAAAAGGCAAAAGCTGCAGAAACTAGAGCTTCATCTG AACAGGAATTAAGAATAACTCAAAGTGAATTTGATCGTCAGGCAGAGATTACCAGGCTTC TTCTGGAGGGAATCAGCAGTACACATGCCCATCACCTCCGCTGCCTGAATGACTTTGTAG AAGCACAGATGACCTACTATGCGCAGTGCTACCAGTACATGTTAGACCTCCAGAAACAGC TGGGAAGTTTTCCATCAAATTATCATTGTAACAACAACCAGACTTCCGTGGCACCTGTGC CATCTGCCTCATCAAATGCGATTGGCTCTTCTGCCTTGACTTCCACAAGTGGCCTAGGAC TCACCTCTTCTTCCAACCTCCCTGACCTCAAGGAGTGCGTTGGCAGCAGGAAGGCCAGGG TTCTGTACGATTACGATGCTGCGAACAGTACTGAGTTGTCCCTGCTGGCGGACGAGGTGA TCAGTGTTTACAGTGTTGCTGGAATGGATTCCGACTGGCTCATGGGGGAGAGGGGGAACC AGAAGGGCAGGGTGCCCATCACCTACTTAGAACTGCTCAACTGATAGGTGGACGGCGACA GACACCGTATTTATACACACCTAACGCTTAGTACAGCAGGCTTAACGCTCTTCCGTGTTA ATGTCTTAAGCGACTGAAAAGAAAAACCAGCTCTCAGAAACTGGCCTTTCTGCCAGTAAA ACTGCATGGTAAATTTTTCGTTGCAGAATTTATGTTAGAGCTTTCATGCCAAGAGTGTTT TCTTACAACATTCTCTTTCTACTGAAGTTTCACTAATAAGTAGCTTCTCCTTTCGAGCCC CACCTTAAAACTGTTTTCTACTGAATTTTTCATTAATGGCAAGCTTTTTCTTTTATGTAA AATAAATTTATTGTGAATTGAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 156-300, gnl|bosTau2|chr9 (36106693-36106837) | |
| 156-300, gnl|canFam2|chr6 (64521437-64521267) | |
| 156-300, gnl|danRer3|chr24 (26311243-26311412) | |
| 156-300, gnl|dasNov1|scaffold_31415 (3231-3079) | |
| 156-300, gnl|echTel1|scaffold_157889 (1329-1479) | |
| 156-300, gnl|fr1|chrUn (47698881-47699048) | |
| 156-300, gnl|galGal2|chr8 (16281911-16281759) | |
| 156-300, gnl|hg17|chr1 (86893423-86893593) | |
| 156-300, gnl|Hg17|chr1 (86893425-86893569) | |
| 156-300, gnl|loxAfr1|scaffold_9360 (45802-45974) | |
| 156-300, gnl|mm7|chr3 (144605794-144605626) | |
| 156-300, gnl|Mm7|chr3 (144605790-144605646) | |
| 156-300, gnl|monDom2|scaffold_123 (606604-606774) | |
| 156-300, gnl|oryCun1|scaffold_203758 (109240-109070) | |
| 156-300, gnl|panTro1|chr1 (85547563-85547733) | |
| 156-300, gnl|rheMac2|chr1 (89427294-89427464) | |
| 156-300, gnl|rn3|chr2 (242882687-242882519) | |
| 156-300, gnl|tetNig1|chrUn_random (52769996-52770146) | |
| 156-300, gnl|xenTro1|scaffold_74 (52226-52062) | |
| 429-563, gnl|bosTau2|chr9 (36112639-36112773) | |
| 429-563, gnl|canFam2|chr6 (64516205-64516032) | |
| 429-563, gnl|danRer3|chr24 (26311993-26312144) | |
| 429-563, gnl|dasNov1|scaffold_166522 (1640-1472) | |
| 429-563, gnl|fr1|chrUn (47699615-47699770) | |
| 429-563, gnl|galGal2|chr8 (16279195-16279022) | |
| 429-563, gnl|hg17|chr1 (86900220-86900400) | |
| 429-563, gnl|Hg17|chr1 (86900243-86900377) | |
| 429-563, gnl|loxAfr1|scaffold_9360 (58472-58645) | |
| 429-563, gnl|mm7|chr3 (144599809-144599636) | |
| 429-563, gnl|Mm7|chr3 (144599791-144599657) | |
| 429-563, gnl|monDom2|scaffold_123 (613349-613515) | |
| 429-563, gnl|oryCun1|scaffold_203758 (101485-101312) | |
| 429-563, gnl|panTro1|chr1 (85554385-85554565) | |
| 429-563, gnl|rheMac2|chr1 (89434095-89434275) | |
| 429-563, gnl|rn3|chr2 (242876495-242876322) | |
| 429-563, gnl|tetNig1|chr10 (8846331-8846492) | |
| 429-563, gnl|xenTro1|scaffold_74 (44666-44497) | |
| 743-847, gnl|bosTau2|chr3 (42645723-42645827) | |
| 743-847, gnl|canFam2|chr6 (64505175-64505040) | |
| 743-847, gnl|danRer3|chr24 (26319397-26319531) | |
| 743-847, gnl|dasNov1|scaffold_189689 (1148-1013) | |
| 743-847, gnl|echTel1|scaffold_314141 (48719-48847) | |
| 743-847, gnl|galGal2|chr8 (16270377-16270248) | |
| 743-847, gnl|hg17|chr1 (86912772-86912907) | |
| 743-847, gnl|Hg17|chr1 (86912779-86912883) | |
| 743-847, gnl|loxAfr1|scaffold_43343 (3862-3993) | |
| 743-847, gnl|mm7|chr3 (144590027-144589893) | |
| 743-847, gnl|Mm7|chr3 (144590017-144589913) | |
| 743-847, gnl|monDom2|scaffold_123 (630375-630527) | |
| 743-847, gnl|oryCun1|scaffold_203758 (90033-89898) | |
| 743-847, gnl|panTro1|chr1 (85566979-85567114) | |
| 743-847, gnl|rheMac2|chr1 (89446547-89446682) | |
| 743-847, gnl|rn3|chr2 (242867335-242867200) | |
| 743-847, gnl|tetNig1|chrUn_random (52771536-52771648) | |
| 743-847, gnl|xenTro1|scaffold_74 (35800-35668) | |
| 971-1521, gnl|bosTau2|chr3 (42656761-42657319) | |
| 1075-1184, gnl|bosTau2|chr11 (78811068-78810959) | |
| 1075-1184, gnl|Hg17|chr9 (128850626-128850517) | |
| 1075-1184, gnl|Mm7|chr2 (30352740-30352631) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 156-300, gnl|bosTau2|chr9 (36106693-36106837) | |
| 156-300, gnl|canFam2|chr6 (64521437-64521267) | |
| 156-300, gnl|danRer3|chr24 (26311243-26311412) | |
| 156-300, gnl|dasNov1|scaffold_31415 (3231-3079) | |
| 156-300, gnl|echTel1|scaffold_157889 (1329-1479) | |
| 156-300, gnl|fr1|chrUn (47698881-47699048) | |
| 156-300, gnl|galGal2|chr8 (16281911-16281759) | |
| 156-300, gnl|hg17|chr1 (86893423-86893593) | |
| 156-300, gnl|Hg17|chr1 (86893425-86893569) | |
| 156-300, gnl|loxAfr1|scaffold_9360 (45802-45974) | |
| 156-300, gnl|mm7|chr3 (144605794-144605626) | |
| 156-300, gnl|Mm7|chr3 (144605790-144605646) | |
| 156-300, gnl|monDom2|scaffold_123 (606604-606774) | |
| 156-300, gnl|oryCun1|scaffold_203758 (109240-109070) | |
| 156-300, gnl|panTro1|chr1 (85547563-85547733) | |
| 156-300, gnl|rheMac2|chr1 (89427294-89427464) | |
| 156-300, gnl|rn3|chr2 (242882687-242882519) | |
| 156-300, gnl|tetNig1|chrUn_random (52769996-52770146) | |
| 156-300, gnl|xenTro1|scaffold_74 (52226-52062) | |
| 429-563, gnl|bosTau2|chr9 (36112639-36112773) | |
| 429-563, gnl|canFam2|chr6 (64516205-64516032) | |
| 429-563, gnl|danRer3|chr24 (26311993-26312144) | |
| 429-563, gnl|dasNov1|scaffold_166522 (1640-1472) | |
| 429-563, gnl|fr1|chrUn (47699615-47699770) | |
| 429-563, gnl|galGal2|chr8 (16279195-16279022) | |
| 429-563, gnl|hg17|chr1 (86900220-86900400) | |
| 429-563, gnl|Hg17|chr1 (86900243-86900377) | |
| 429-563, gnl|loxAfr1|scaffold_9360 (58472-58645) | |
| 429-563, gnl|mm7|chr3 (144599809-144599636) | |
| 429-563, gnl|Mm7|chr3 (144599791-144599657) | |
| 429-563, gnl|monDom2|scaffold_123 (613349-613515) | |
| 429-563, gnl|oryCun1|scaffold_203758 (101485-101312) | |
| 429-563, gnl|panTro1|chr1 (85554385-85554565) | |
| 429-563, gnl|rheMac2|chr1 (89434095-89434275) | |
| 429-563, gnl|rn3|chr2 (242876495-242876322) | |
| 429-563, gnl|tetNig1|chr10 (8846331-8846492) | |
| 429-563, gnl|xenTro1|scaffold_74 (44666-44497) | |
| 743-847, gnl|bosTau2|chr3 (42645723-42645827) | |
| 743-847, gnl|canFam2|chr6 (64505175-64505040) | |
| 743-847, gnl|danRer3|chr24 (26319397-26319531) | |
| 743-847, gnl|dasNov1|scaffold_189689 (1148-1013) | |
| 743-847, gnl|echTel1|scaffold_314141 (48719-48847) | |
| 743-847, gnl|galGal2|chr8 (16270377-16270248) | |
| 743-847, gnl|hg17|chr1 (86912772-86912907) | |
| 743-847, gnl|Hg17|chr1 (86912779-86912883) | |
| 743-847, gnl|loxAfr1|scaffold_43343 (3862-3993) | |
| 743-847, gnl|mm7|chr3 (144590027-144589893) | |
| 743-847, gnl|Mm7|chr3 (144590017-144589913) | |
| 743-847, gnl|monDom2|scaffold_123 (630375-630527) | |
| 743-847, gnl|oryCun1|scaffold_203758 (90033-89898) | |
| 743-847, gnl|panTro1|chr1 (85566979-85567114) | |
| 743-847, gnl|rheMac2|chr1 (89446547-89446682) | |
| 743-847, gnl|rn3|chr2 (242867335-242867200) | |
| 743-847, gnl|tetNig1|chrUn_random (52771536-52771648) | |
| 743-847, gnl|xenTro1|scaffold_74 (35800-35668) | |
| 971-1521, gnl|bosTau2|chr3 (42656761-42657319) | |
| 1075-1184, gnl|bosTau2|chr11 (78811068-78810959) | |
| 1075-1184, gnl|Hg17|chr9 (128850626-128850517) | |
| 1075-1184, gnl|Mm7|chr2 (30352740-30352631) |
| Expressed library(ies): 42 entry(ies) | More info |
| Expressed library(ies): 42 entry(ies) | Help | Less info |
| tes (1.4547) | |
| sme (0.91631) | |
| sag (0.548145) | |
| ste (0.540833) | |
| sin (0.524843) | |
| ssp (0.406559) | |
| aor (0.390549) | |
| cje (0.330469) | |
| tbr (0.308356) | |
| ski (0.29347) | |
| cte (0.29274) | |
| lnt (0.284616) | |
| csk (0.281492) | |
| sug (0.254582) | |
| med (0.232504) | |
| jca (0.22792) | |
| nms (0.213858) | |
| col (0.195008) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ton (0.1755) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nje (0.16592) | |
| isp (0.150376) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| cst (0.140036) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ese (0.126502) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 42 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (1.4547) | |
| sme (0.91631) | |
| sag (0.548145) | |
| ste (0.540833) | |
| sin (0.524843) | |
| ssp (0.406559) | |
| aor (0.390549) | |
| cje (0.330469) | |
| tbr (0.308356) | |
| ski (0.29347) | |
| cte (0.29274) | |
| lnt (0.284616) | |
| csk (0.281492) | |
| sug (0.254582) | |
| med (0.232504) | |
| jca (0.22792) | |
| nms (0.213858) | |
| col (0.195008) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ton (0.1755) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nje (0.16592) | |
| isp (0.150376) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| cst (0.140036) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ese (0.126502) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |