Non-Coding RNA Search

Ss1.1-Pig3-SRG8013G22.3

Sequence:


               
               TTTTAAGTATAATGAATTAGTTGTTATCACCTGGTAAAAAATACATTTCCAAGCAAGTTC
ATGTTAAAAAATATTTTACTAACATAAATATAATTATAAATTCTCTCCCTAAAAGAAGTT
CATGTCAGTTCAGGGTGCTGTGCAATTGTCTTTCAAATTTTTCCATTAAACTAAAAGACT
GATTCCACTTGAGATAATTATATATATATATAATCTCTGATTTACCTTTTTAAACAAGGA
AGTAGTCACACATGTCAAGTTACCCAAACCATATGAAGTTTAGGTAGAAGAAAATTGGAA
AGCATTATTATTGGAAACCAATGCCTTAACTCTTTAAATAGCAATACCCTTTCTCAGAAA
ATCTGGTTTATGCTTTTTTGTACAAAAGAAAAGAAAGAAAAAAAAAATTCTCCCAAGGAT
AAGCCTAAAGCCTAAAAAGGTAATTTTAATTTTAATGTTATAAGTTCAGAAATGAGAATT
AGGTAGGGTTGGTAGTATTAAATTGAAACCCACCAACGCCCTTGCTCTGAGCTCTTCAAG
TAGGATCCTGTTCCGCACACACGCACTCCACTGAATATACACAGAATAGCATTTTAATAG
GATGAGGCTGGGTTCAACACAGAGGAACATGCTAATGGACTCAACTCAAAAAAATATTCC
CAGGTACACCCTCTGGCCACCAAAACAAAATCATCTTTTCAATGAGAAGAAAGTTCCTTG
GTAGTTTTAGACATAGAATACTACCATCATGCCATCTGTATTTCTTAAATTATTACCATC
AGACTGAGTTCTGAAAAGGTCCCAATTGCTAGAACACCTGTCTCTGACCAGATCACCCTA
CTGCATACAACCAGCTATTGTTTGACAAAAGAGAAAGAAATGATTTTAGTAATTTAGAGA
AACTACCTCTAAATTAATCTAAATTCTAAAGCCATATCAAGTAACATATATGTCCTTACT
CTGGTATAATAGCTATCTTCATGCCAGACCCAACTACCAGAATATAAAGACATTTTTGCT
ACCAATGCACCTCACCACTGCCCAGGGTCCATTATTATTAGAGAACTAGAGATGTTCAAG
GGCATCCTAGGGTCTGATCTTAATTCAGAAACAAAGGTAAGGCTCCTTCCCTGATGACTT
CTTCCTCCCTATCTTACCCCTCCAATTCAAAGAGCAAGTCTTGAGTGTGCTGGTATAGAA
AAACCATCTCGTCCATTTAGAAATGGAAAATCTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAAGTATAATGAATTAGTTGTTATCACCTGGTAAAAAATACATTTCCAAGCAAGTTC
ATGTTAAAAAATATTTTACTAACATAAATATAATTATAAATTCTCTCCCTAAAAGAAGTT
CATGTCAGTTCAGGGTGCTGTGCAATTGTCTTTCAAATTTTTCCATTAAACTAAAAGACT
GATTCCACTTGAGATAATTATATATATATATAATCTCTGATTTACCTTTTTAAACAAGGA
AGTAGTCACACATGTCAAGTTACCCAAACCATATGAAGTTTAGGTAGAAGAAAATTGGAA
AGCATTATTATTGGAAACCAATGCCTTAACTCTTTAAATAGCAATACCCTTTCTCAGAAA
ATCTGGTTTATGCTTTTTTGTACAAAAGAAAAGAAAGAAAAAAAAAATTCTCCCAAGGAT
AAGCCTAAAGCCTAAAAAGGTAATTTTAATTTTAATGTTATAAGTTCAGAAATGAGAATT
AGGTAGGGTTGGTAGTATTAAATTGAAACCCACCAACGCCCTTGCTCTGAGCTCTTCAAG
TAGGATCCTGTTCCGCACACACGCACTCCACTGAATATACACAGAATAGCATTTTAATAG
GATGAGGCTGGGTTCAACACAGAGGAACATGCTAATGGACTCAACTCAAAAAAATATTCC
CAGGTACACCCTCTGGCCACCAAAACAAAATCATCTTTTCAATGAGAAGAAAGTTCCTTG
GTAGTTTTAGACATAGAATACTACCATCATGCCATCTGTATTTCTTAAATTATTACCATC
AGACTGAGTTCTGAAAAGGTCCCAATTGCTAGAACACCTGTCTCTGACCAGATCACCCTA
CTGCATACAACCAGCTATTGTTTGACAAAAGAGAAAGAAATGATTTTAGTAATTTAGAGA
AACTACCTCTAAATTAATCTAAATTCTAAAGCCATATCAAGTAACATATATGTCCTTACT
CTGGTATAATAGCTATCTTCATGCCAGACCCAACTACCAGAATATAAAGACATTTTTGCT
ACCAATGCACCTCACCACTGCCCAGGGTCCATTATTATTAGAGAACTAGAGATGTTCAAG
GGCATCCTAGGGTCTGATCTTAATTCAGAAACAAAGGTAAGGCTCCTTCCCTGATGACTT
CTTCCTCCCTATCTTACCCCTCCAATTCAAAGAGCAAGTCTTGAGTGTGCTGGTATAGAA
AAACCATCTCGTCCATTTAGAAATGGAAAATCTATA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               180-294, - strand, RNAz p=0.740829
               

               
               605-724, - strand, RNAz p=0.91926

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               180-294, - strand, RNAz p=0.740829
               

               
               605-724, - strand, RNAz p=0.91926

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1236, gnl|bosTau2|chr10 (29398979-29397771)
               

               
               1-1236, gnl|Hg17|chr14 (50524574-50523095)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1236, gnl|bosTau2|chr10 (29398979-29397771)
               

               
               1-1236, gnl|Hg17|chr14 (50524574-50523095)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	180-294, - strand, RNAz p=0.740829
	605-724, - strand, RNAz p=0.91926

	1-1236, gnl\|bosTau2\|chr10 (29398979-29397771)
	1-1236, gnl\|Hg17\|chr14 (50524574-50523095)