Non-Coding RNA Search

Ss1.1-Pig3-SRG8013I04.3

Sequence:


               
               CTAATACAACCATTCCAAAACAAGTATCTGGCCAAGATGTTTCCACCAAGAATATTCCCT
CTTTTTGTCTTAAAAACATCAAGAAGAAAACGGATAGTGAAGCTTGGAATGTGCTCTGAC
TGAGGGGTGCCTGGATCTCTGAAGAAGAGCTCATGTTCAACTCTTGATTATTCAGGAGCG
GATTATCCTAGTAGGTTGTCTGAGCCTCCAGCTGGTACCATCCATTTCACAGCTCAGTAA
CCCATGAAGTAAGCAGGCGAAGAAAAGGTATACATAACTGAGATGTGCCAATTGCGTTGC
TACTTATCAGCTGTTGGCAATAAATTTGATTAGGAAGGGTCCCCCATGCTTTGGGAATTG
TTTGAATTTTATTTTTTCTACTCCCCATTAATCAAGAGTTAACGATCCCCTGAGTAGGAC
CGCCTCCATGATTAGGGAGCATGCACTCGTGACTGCAGGGTAAGAGTGGAAAGACATGTT
TGTGGAGTGGCACCGACAGGACTGTGATTGTGTGTGGGCATGGCCCACGTTCCTTTGGGG
GATGCTTCTTTGAGAGTGGCCTAGGTGAGAGTATTCTAAAGCCACCCACACACCTACACT
GTTCTGGATGAGAGACGAGAGCAGACTGGCTTCTCCCCATCAGTGCATTGTGCCTGTTGT
ACACCCCTGGAGTAGCCCTGGAGCCAGCCAGGTGGGGTACACAATCTTTTTAAATTCCAT
ACGGTTGCCAGCTTATTTCTTTCACTTGTTTACTGTAATATCTGGTGTGTTTTTATTTAT
CTAATTTTGTATTCAGTTATAACCATGGTAGGGGTAGCAAATATATGACAGGTGTAATCC
CTGGTGCTGCAGTGGACCTTCTTTCTTTTGGACAAGATAATACTGTGAGTCTCCCCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAATACAACCATTCCAAAACAAGTATCTGGCCAAGATGTTTCCACCAAGAATATTCCCT
CTTTTTGTCTTAAAAACATCAAGAAGAAAACGGATAGTGAAGCTTGGAATGTGCTCTGAC
TGAGGGGTGCCTGGATCTCTGAAGAAGAGCTCATGTTCAACTCTTGATTATTCAGGAGCG
GATTATCCTAGTAGGTTGTCTGAGCCTCCAGCTGGTACCATCCATTTCACAGCTCAGTAA
CCCATGAAGTAAGCAGGCGAAGAAAAGGTATACATAACTGAGATGTGCCAATTGCGTTGC
TACTTATCAGCTGTTGGCAATAAATTTGATTAGGAAGGGTCCCCCATGCTTTGGGAATTG
TTTGAATTTTATTTTTTCTACTCCCCATTAATCAAGAGTTAACGATCCCCTGAGTAGGAC
CGCCTCCATGATTAGGGAGCATGCACTCGTGACTGCAGGGTAAGAGTGGAAAGACATGTT
TGTGGAGTGGCACCGACAGGACTGTGATTGTGTGTGGGCATGGCCCACGTTCCTTTGGGG
GATGCTTCTTTGAGAGTGGCCTAGGTGAGAGTATTCTAAAGCCACCCACACACCTACACT
GTTCTGGATGAGAGACGAGAGCAGACTGGCTTCTCCCCATCAGTGCATTGTGCCTGTTGT
ACACCCCTGGAGTAGCCCTGGAGCCAGCCAGGTGGGGTACACAATCTTTTTAAATTCCAT
ACGGTTGCCAGCTTATTTCTTTCACTTGTTTACTGTAATATCTGGTGTGTTTTTATTTAT
CTAATTTTGTATTCAGTTATAACCATGGTAGGGGTAGCAAATATATGACAGGTGTAATCC
CTGGTGCTGCAGTGGACCTTCTTTCTTTTGGACAAGATAATACTGTGAGTCTCCCCCCCC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               145-245, - strand, RNAz p=0.539821
               

               
               325-483, - strand, RNAz p=0.997112
               

               
               597-711, - strand, RNAz p=0.632493

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-245, - strand, RNAz p=0.539821
               

               
               325-483, - strand, RNAz p=0.997112
               

               
               597-711, - strand, RNAz p=0.632493

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-898, gnl|bosTau2|chr22 (14541325-14540417)
               

               
               2-898, gnl|Hg17|chr3 (9493261-9494200)
               

               
               2-898, gnl|Mm7|chr6 (113312880-113313738)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-898, gnl|bosTau2|chr22 (14541325-14540417)
               

               
               2-898, gnl|Hg17|chr3 (9493261-9494200)
               

               
               2-898, gnl|Mm7|chr6 (113312880-113313738)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	145-245, - strand, RNAz p=0.539821
	325-483, - strand, RNAz p=0.997112
	597-711, - strand, RNAz p=0.632493

	2-898, gnl\|bosTau2\|chr22 (14541325-14540417)
	2-898, gnl\|Hg17\|chr3 (9493261-9494200)
	2-898, gnl\|Mm7\|chr6 (113312880-113313738)