Non-Coding RNA Search

Ss1.1-Pig3-SRG8013I07.3

Sequence:


               
               ATGCTGCATGTTAGAGACTGTGACCAGGTGGCACAGTGATAGAGCCACATATGAAAAGGA
ATGTGGGAATTATCCAGGATTTCTTACTATATTACGGGCAACTGGATTTGATGGTGGAAA
TAAAGCTGATCAGTTAGATTATGAAAATTTTCGACATGTTGTACATAAATGGCATTACAA
ACTAACCAAGGCATCGGTACATTGCCTTGAAACAGGCGAATATACTCACATCAGGAATAT
CTTGATTGTGCTAACAAAAATACTTCCTTGGTACCCAAAAGTTTTGAATCTTGGTCAGGC
TTTGGAAAGAAGAGTGCATAAAATCTGCCAAGAGGAAAAAGAGAAGAGGCCAGATCTATA
TGCATTGGCTATGGGCTACTCTGGGCAGTTGAAAAGTAGAAAGTCATACATGATACCTGA
AAATGAGTTTCATCACAAAGACCCCCCTCCGAGGAATGCAGTTGCCAGTGTACAAAATGG
GCCTGGTGGTGGGCCTTCTTCTTCATCGATAGGAAGTGCATCTAAATCAGACGAAAGCAG
TACTGAGGAGACTGATAAATCAAGGGAGAGATCTCAGTGTGGTGTGAAAGCTGTTAATAA
AGCTTCTAATGCCACACCGAAAGGGAATTCAAGCAATGGAAATAGTGGCTCTAACAGCAA
AACTGTTAAAGAAAATGACAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCTGCATGTTAGAGACTGTGACCAGGTGGCACAGTGATAGAGCCACATATGAAAAGGA
ATGTGGGAATTATCCAGGATTTCTTACTATATTACGGGCAACTGGATTTGATGGTGGAAA
TAAAGCTGATCAGTTAGATTATGAAAATTTTCGACATGTTGTACATAAATGGCATTACAA
ACTAACCAAGGCATCGGTACATTGCCTTGAAACAGGCGAATATACTCACATCAGGAATAT
CTTGATTGTGCTAACAAAAATACTTCCTTGGTACCCAAAAGTTTTGAATCTTGGTCAGGC
TTTGGAAAGAAGAGTGCATAAAATCTGCCAAGAGGAAAAAGAGAAGAGGCCAGATCTATA
TGCATTGGCTATGGGCTACTCTGGGCAGTTGAAAAGTAGAAAGTCATACATGATACCTGA
AAATGAGTTTCATCACAAAGACCCCCCTCCGAGGAATGCAGTTGCCAGTGTACAAAATGG
GCCTGGTGGTGGGCCTTCTTCTTCATCGATAGGAAGTGCATCTAAATCAGACGAAAGCAG
TACTGAGGAGACTGATAAATCAAGGGAGAGATCTCAGTGTGGTGTGAAAGCTGTTAATAA
AGCTTCTAATGCCACACCGAAAGGGAATTCAAGCAATGGAAATAGTGGCTCTAACAGCAA
AACTGTTAAAGAAAATGACAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               191-284, - strand, RNAz p=0.985076
               

               
               567-682, - strand, RNAz p=0.999347

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               191-284, - strand, RNAz p=0.985076
               

               
               567-682, - strand, RNAz p=0.999347

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-682, gnl|bosTau2|chr1 (72483650-72484333)
               

               
               2-682, gnl|Hg17|chrX (122483983-122480946)
               

               
               2-682, gnl|Mm7|chr5 (103711375-103712055)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-682, gnl|bosTau2|chr1 (72483650-72484333)
               

               
               2-682, gnl|Hg17|chrX (122483983-122480946)
               

               
               2-682, gnl|Mm7|chr5 (103711375-103712055)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sug (0.254582)
               

               
               pan (0.23596)
               

               
               tes (0.207814)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.254582)
               

               
               pan (0.23596)
               

               
               tes (0.207814)

	191-284, - strand, RNAz p=0.985076
	567-682, - strand, RNAz p=0.999347

	2-682, gnl\|bosTau2\|chr1 (72483650-72484333)
	2-682, gnl\|Hg17\|chrX (122483983-122480946)
	2-682, gnl\|Mm7\|chr5 (103711375-103712055)