Non-Coding RNA Search

Ss1.1-Pig3-SRG8013I09.3

Sequence:


               
               GAAGACTCATCCCTGAGACTTTTGACAGTGATGAGAAAGTTGCCAGCAGGGTGTTGTCTG
TCTCAGTGCCCATCTGCTGAAGGCCAGGGCGTGTTCCTGGCCATTCTGGTCAAGGGCTTC
CTGGAGGAGGTAGTCCCTCTTACACATTAAGACTGAGGAAATCAAGATGTTTGGTGGTCC
CTAAGGAGAAGAAATGCCAGGCAGTTGGGCTGCCTCAACAGGCATCTTGTGCCAGATCTG
GCCCCTGGAAGAAGAGGTTTCCCCATTCCTACACTCACTCTCACCCCCACCCCTAACCCC
CAGAGAGTGTGGGGAGCAGACATGGCATCAGCATCTTTGTTTCTGTTCCAAGTGCATTCC
TCTCCATCATCAAGTGAGTTCATATCCTCTTCCTGGTGGCTTGTGCACTAGGGATTGTTA
AAATGAACAAGGGTCCCTAAGGAAGAATAATGCACCACGGGGAAGTCAGTGCCTGTGAGG
AACCAGTCAGGTGTGCTCGTGACTCCCCTGGTAGCCTGGCAGATGGTGGGAGGAGCAAAG
AGCCCGCTGCTGTGGGATTTGAGTTGAGAAATGTGCAGATTCTGGGGAGTTAGCATAGGA
GCTAACAGGTTGGGAAGAAATTGGAGGCCAGGTGAGCTTTGTGTAGCTGTAGCTGGACCC
TTCCTGGGCCCAGATCCCATTCTTATAAGTGCAAAACTCATCTAATTGTATACTTTAAAC
CGGTTCCTTTTATGGTATGGAATAAAGTTAATTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGACTCATCCCTGAGACTTTTGACAGTGATGAGAAAGTTGCCAGCAGGGTGTTGTCTG
TCTCAGTGCCCATCTGCTGAAGGCCAGGGCGTGTTCCTGGCCATTCTGGTCAAGGGCTTC
CTGGAGGAGGTAGTCCCTCTTACACATTAAGACTGAGGAAATCAAGATGTTTGGTGGTCC
CTAAGGAGAAGAAATGCCAGGCAGTTGGGCTGCCTCAACAGGCATCTTGTGCCAGATCTG
GCCCCTGGAAGAAGAGGTTTCCCCATTCCTACACTCACTCTCACCCCCACCCCTAACCCC
CAGAGAGTGTGGGGAGCAGACATGGCATCAGCATCTTTGTTTCTGTTCCAAGTGCATTCC
TCTCCATCATCAAGTGAGTTCATATCCTCTTCCTGGTGGCTTGTGCACTAGGGATTGTTA
AAATGAACAAGGGTCCCTAAGGAAGAATAATGCACCACGGGGAAGTCAGTGCCTGTGAGG
AACCAGTCAGGTGTGCTCGTGACTCCCCTGGTAGCCTGGCAGATGGTGGGAGGAGCAAAG
AGCCCGCTGCTGTGGGATTTGAGTTGAGAAATGTGCAGATTCTGGGGAGTTAGCATAGGA
GCTAACAGGTTGGGAAGAAATTGGAGGCCAGGTGAGCTTTGTGTAGCTGTAGCTGGACCC
TTCCTGGGCCCAGATCCCATTCTTATAAGTGCAAAACTCATCTAATTGTATACTTTAAAC
CGGTTCCTTTTATGGTATGGAATAAAGTTAATTTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               50-165, - strand, RNAz p=0.871563

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-165, - strand, RNAz p=0.871563

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-692, gnl|bosTau2|chr13 (33674582-33673907)
               

               
               4-692, gnl|Hg17|chr20 (3616396-3615687)
               

               
               4-692, gnl|Mm7|chr2 (130809997-130808720)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-692, gnl|bosTau2|chr13 (33674582-33673907)
               

               
               4-692, gnl|Hg17|chr20 (3616396-3615687)
               

               
               4-692, gnl|Mm7|chr2 (130809997-130808720)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cag (0.151194)
               

               
               ese (0.126502)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               ese (0.126502)
               

               
               cly (0.120642)

	4-692, gnl\|bosTau2\|chr13 (33674582-33673907)
	4-692, gnl\|Hg17\|chr20 (3616396-3615687)
	4-692, gnl\|Mm7\|chr2 (130809997-130808720)