Ss1.1-Pig3-SRG8013I22.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGAGAGCGGGAGGCGCCCGGCCCCTCTGCGCCGTCGTCCGGGTACCCCTGTCCCGTTC GCTCGGCCGGCATTTTCCGCTTCCACTCAGGGAGACAGCTGGGGTGAGGGTGAAGTCGAT GAGGAGGAGGGATGCGACCGAGTAGCCCGTGACCTGCGAGCGGAATTCTCGGCCAGGGCG TCGCCCGAACCTAGAAAGGACTCGCTCCTCCGGCCAGATGGGGACGGGTCTTCCCTCCTG GCGGATAAGCGGAATGGCATCTTGGCGGATGCGGGCGGTCGAACCCGAGCTCGGCGCTGG CCGGTCCAGGTCCTCTCAATTCTCTGTTCGCTGCTGTTCGCCATCCTCCTTGCCTTCCTC CTCGCCATCACCTACCTGATCGTAAAAGAGTTACATGCTGAGAATTTGAAGAATGAAGAT GATGTTCATACTGGGCTGTTAGGATTCTGGACTCTACTTATAATATCCCTAACAGCTGGA TTCTCCTGCTGCAGCTTTTCTTGGACAGTGACTTATTTTGATTCTTTTGAACCAGGAATG TTTCCTCCTACTCCCCTTTCACCTGCCAGGTTCAAGAAACTGACCGGACATTCTTTCCAC ATGGGCTATAGCATGGCAATTTTGAATGGCATTGTAGCTGCTCTTACTGTAGCATGGTGC CTCATGTAAACCCACACTTAACAAAACTTAGTCATGAACATCATTGCCTGCTTGGAAGAT TAAGAAACCTGCTGTTCATTATGTGGTTCAAGTATCATCATCATCATGGAGGACTTTTTG AGCATTGTTGTAGAGCCTAGGCATTGGGAATATCTAAGTATTAAGTTTCAAGTAATTCTT AAAAGTGTGAGATGTTTACCTCATCTTTTTACTTTTGTGTCTCTTGTCCTTATAGAAAAC ATTTTAATGGAAATCAAACTTGAAAACTTGAATACAGGACATCTTGTATCAATGCCTGCC TTTCCATGTATATGTATATACTACCTTTTTGCTGAGAAATACTGATAGTATGGTTAATTA AGATAGAAATATTTCTTATTTATTCATTATATTAGAACAGCAAACAATGCCTACTACTTT TATAGATGCTACTTTTAAATCAGAATAGTTTTTGATATATAATCAATACAAGGTGCATTT ATATTTTTTAATGGGGCATAGTTCCTTATGTGTTTTTTTACATATTTTCCTACTATATAT TGAATTTGTATGTTTTTAGACAAATGTAAATATTATTTTTTAGCTGGTATAAACCTAACA GCTACCATTTTTAATAGGTATTTTTGTCTAAGAAAAGTAAATTGGGGACTTACCTGGTGG CCCAGTCAGTTAAGGACAGGGAACTTCCTCATGCCATGGGCATGGCCAAAAAGAAAAAAA AAAAAATACATTGGCTTGAGTTTAAAACTAAGTAGGAGTTCCTACTGTGGCCCAGCAGGT TAAGGACCTGATATGGTCTCTGTGAGGATGTGGGCTCAATCCCTAGCCTTGCTCAATGGG TTAAGGATCTGACTGACGTTGCTGCAAGCTGTGGCATAGATCGCAGATGTGGCTCAGATC TGTTGCCATGGCTATGACATAGGCCTGCAGCTCCAGCTCCAGTTTGACCTCTAGTCTGGG AATTTCCATACGTTGCAAGTACTTCCATAAAAAGGAAAAAACAAAAACTAATTTTTAACC AAAAATGAAAACAGTTGATTTAAGCCATAAAAATACTGAGGAAACTTAAAGCTGTTCACT GTTTACATTTTCACAATTCCAAATATTTGATGTATATGTGGTTACTTCAGAAGAACTGAT ATGATTTTGTTTTTAATAGATATAAACTTGGAATTTTTATATTTAGAAATGCTTGATCAG TTTGTTTTTAATCACCAAAATAGAAAAGATTTTGATAAAGCATATGTATAATTTTTTTAT ATATAGTTTCATTGTTTTCCTGTTTAAATGTATTTTTTTGTTCATTTGTTTTGCTGCTTC CATGGTATGCAGAAGTTCCAGGGCCAGGGATGGAACCTGAGCCACAGCAGCAACAATACC AGATCCTTAACCCACTGAGCCACCTGGAAAATGTTCCTTTGTAATTGTGCTGGGGTTTTT TATTGTTTTTGTAGTAATTAAGCCTTACTTATTCCTACTTCCTTTCTAAGTACCTGTTTG GAGTAGTCTCCCCAATTTTAGAAAGATAGACTATTTAAAACACTGTTTTTCCGGGCTATA GAAAAACCTACATTAGGGTAGCATTGTGCAGCAAAACTACTTATTCAGGCCAAGTGGGAA ATGAATGTGTGCAGTGTGTTCCTGTTATCTGCTGATTATTGTTACTGAATAAATGATTTA AATGATGCGTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGAGAGCGGGAGGCGCCCGGCCCCTCTGCGCCGTCGTCCGGGTACCCCTGTCCCGTTC GCTCGGCCGGCATTTTCCGCTTCCACTCAGGGAGACAGCTGGGGTGAGGGTGAAGTCGAT GAGGAGGAGGGATGCGACCGAGTAGCCCGTGACCTGCGAGCGGAATTCTCGGCCAGGGCG TCGCCCGAACCTAGAAAGGACTCGCTCCTCCGGCCAGATGGGGACGGGTCTTCCCTCCTG GCGGATAAGCGGAATGGCATCTTGGCGGATGCGGGCGGTCGAACCCGAGCTCGGCGCTGG CCGGTCCAGGTCCTCTCAATTCTCTGTTCGCTGCTGTTCGCCATCCTCCTTGCCTTCCTC CTCGCCATCACCTACCTGATCGTAAAAGAGTTACATGCTGAGAATTTGAAGAATGAAGAT GATGTTCATACTGGGCTGTTAGGATTCTGGACTCTACTTATAATATCCCTAACAGCTGGA TTCTCCTGCTGCAGCTTTTCTTGGACAGTGACTTATTTTGATTCTTTTGAACCAGGAATG TTTCCTCCTACTCCCCTTTCACCTGCCAGGTTCAAGAAACTGACCGGACATTCTTTCCAC ATGGGCTATAGCATGGCAATTTTGAATGGCATTGTAGCTGCTCTTACTGTAGCATGGTGC CTCATGTAAACCCACACTTAACAAAACTTAGTCATGAACATCATTGCCTGCTTGGAAGAT TAAGAAACCTGCTGTTCATTATGTGGTTCAAGTATCATCATCATCATGGAGGACTTTTTG AGCATTGTTGTAGAGCCTAGGCATTGGGAATATCTAAGTATTAAGTTTCAAGTAATTCTT AAAAGTGTGAGATGTTTACCTCATCTTTTTACTTTTGTGTCTCTTGTCCTTATAGAAAAC ATTTTAATGGAAATCAAACTTGAAAACTTGAATACAGGACATCTTGTATCAATGCCTGCC TTTCCATGTATATGTATATACTACCTTTTTGCTGAGAAATACTGATAGTATGGTTAATTA AGATAGAAATATTTCTTATTTATTCATTATATTAGAACAGCAAACAATGCCTACTACTTT TATAGATGCTACTTTTAAATCAGAATAGTTTTTGATATATAATCAATACAAGGTGCATTT ATATTTTTTAATGGGGCATAGTTCCTTATGTGTTTTTTTACATATTTTCCTACTATATAT TGAATTTGTATGTTTTTAGACAAATGTAAATATTATTTTTTAGCTGGTATAAACCTAACA GCTACCATTTTTAATAGGTATTTTTGTCTAAGAAAAGTAAATTGGGGACTTACCTGGTGG CCCAGTCAGTTAAGGACAGGGAACTTCCTCATGCCATGGGCATGGCCAAAAAGAAAAAAA AAAAAATACATTGGCTTGAGTTTAAAACTAAGTAGGAGTTCCTACTGTGGCCCAGCAGGT TAAGGACCTGATATGGTCTCTGTGAGGATGTGGGCTCAATCCCTAGCCTTGCTCAATGGG TTAAGGATCTGACTGACGTTGCTGCAAGCTGTGGCATAGATCGCAGATGTGGCTCAGATC TGTTGCCATGGCTATGACATAGGCCTGCAGCTCCAGCTCCAGTTTGACCTCTAGTCTGGG AATTTCCATACGTTGCAAGTACTTCCATAAAAAGGAAAAAACAAAAACTAATTTTTAACC AAAAATGAAAACAGTTGATTTAAGCCATAAAAATACTGAGGAAACTTAAAGCTGTTCACT GTTTACATTTTCACAATTCCAAATATTTGATGTATATGTGGTTACTTCAGAAGAACTGAT ATGATTTTGTTTTTAATAGATATAAACTTGGAATTTTTATATTTAGAAATGCTTGATCAG TTTGTTTTTAATCACCAAAATAGAAAAGATTTTGATAAAGCATATGTATAATTTTTTTAT ATATAGTTTCATTGTTTTCCTGTTTAAATGTATTTTTTTGTTCATTTGTTTTGCTGCTTC CATGGTATGCAGAAGTTCCAGGGCCAGGGATGGAACCTGAGCCACAGCAGCAACAATACC AGATCCTTAACCCACTGAGCCACCTGGAAAATGTTCCTTTGTAATTGTGCTGGGGTTTTT TATTGTTTTTGTAGTAATTAAGCCTTACTTATTCCTACTTCCTTTCTAAGTACCTGTTTG GAGTAGTCTCCCCAATTTTAGAAAGATAGACTATTTAAAACACTGTTTTTCCGGGCTATA GAAAAACCTACATTAGGGTAGCATTGTGCAGCAAAACTACTTATTCAGGCCAAGTGGGAA ATGAATGTGTGCAGTGTGTTCCTGTTATCTGCTGATTATTGTTACTGAATAAATGATTTA AATGATGCGTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 441-579, + strand, RNAz p=0.730046 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 441-579, + strand, RNAz p=0.730046 |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 1-388, gnl|bosTau2|chr2 (9556958-9557348) | |
| 1-388, gnl|Hg17|chr2 (153400656-153401046) | |
| 1-388, gnl|Mm7|chr2 (53199443-53199833) | |
| 441-579, gnl|bosTau2|chr2 (9570374-9570512) | |
| 441-579, gnl|canFam2|chr19 (56751468-56751559) | |
| 441-579, gnl|canFam2|chr19 (56751405-56751622) | |
| 441-579, gnl|danRer3|chr6 (8811342-8811105) | |
| 441-579, gnl|echTel1|scaffold_318506 (20111-20020) | |
| 441-579, gnl|echTel1|scaffold_318506 (20169-19957) | |
| 441-579, gnl|hg17|chr2 (153416959-153417176) | |
| 441-579, gnl|Hg17|chr2 (153417014-153417152) | |
| 441-579, gnl|hg17|chr8 (81425986-81426077) | |
| 441-579, gnl|loxAfr1|scaffold_67438 (1820-1729) | |
| 441-579, gnl|loxAfr1|scaffold_67438 (1879-1666) | |
| 441-579, gnl|mm7|chr2 (53210234-53210324) | |
| 441-579, gnl|mm7|chr2 (53210192-53210394) | |
| 441-579, gnl|Mm7|chr2 (53210228-53210366) | |
| 441-579, gnl|monDom2|scaffold_2 (44002417-44002639) | |
| 441-579, gnl|oryCun1|scaffold_103526 (10864-10954) | |
| 441-579, gnl|oryCun1|scaffold_190160 (5596-5382) | |
| 441-579, gnl|panTro1|chr13 (42485494-42485711) | |
| 441-579, gnl|panTro1|chr7_random (37178927-37178836) | |
| 441-579, gnl|rheMac2|chr12 (16387867-16388085) | |
| 441-579, gnl|rheMac2|chr8 (82778949-82779040) | |
| 441-579, gnl|rn3|chr3 (34629765-34629856) | |
| 441-579, gnl|rn3|chr3 (34629723-34629925) | |
| 441-579, gnl|xenTro1|scaffold_524 (369735-369922) | |
| 696-1177, gnl|bosTau2|chr2 (9596973-9597460) | |
| 696-1177, gnl|canFam2|chr19 (56761878-56762796) | |
| 696-1177, gnl|dasNov1|scaffold_22169 (50491-51396) | |
| 696-1177, gnl|echTel1|scaffold_318506 (4265-3418) | |
| 696-1177, gnl|hg17|chr2 (153441912-153442828) | |
| 696-1177, gnl|Hg17|chr2 (153441925-153442424) | |
| 696-1177, gnl|loxAfr1|scaffold_42807 (13354-12451) | |
| 696-1177, gnl|mm7|chr2 (53224746-53225648) | |
| 696-1177, gnl|Mm7|chr2 (53224754-53225265) | |
| 696-1177, gnl|monDom2|scaffold_2 (44055170-44056148) | |
| 696-1177, gnl|oryCun1|scaffold_137642 (23788-22914) | |
| 696-1177, gnl|panTro1|chr13 (42510605-42511528) | |
| 696-1177, gnl|rheMac2|chr12 (16413843-16414752) | |
| 696-1177, gnl|rn3|chr3 (34643714-34644609) | |
| 1657-1973, gnl|bosTau2|chr2 (9597635-9597990) | |
| 1657-1973, gnl|canFam2|chr19 (56761878-56762796) | |
| 1657-1973, gnl|dasNov1|scaffold_22169 (50491-51396) | |
| 1657-1973, gnl|echTel1|scaffold_318506 (4265-3418) | |
| 1657-1973, gnl|hg17|chr2 (153441912-153442828) | |
| 1657-1973, gnl|Hg17|chr2 (153442593-153442947) | |
| 1657-1973, gnl|loxAfr1|scaffold_42807 (13354-12451) | |
| 1657-1973, gnl|mm7|chr2 (53224746-53225648) | |
| 1657-1973, gnl|Mm7|chr2 (53225416-53225765) | |
| 1657-1973, gnl|monDom2|scaffold_2 (44055170-44056148) | |
| 1657-1973, gnl|oryCun1|scaffold_137642 (23788-22914) | |
| 1657-1973, gnl|panTro1|chr13 (42510605-42511528) | |
| 1657-1973, gnl|rheMac2|chr12 (16413843-16414752) | |
| 1657-1973, gnl|rn3|chr3 (34643714-34644609) | |
| 2069-2352, gnl|bosTau2|chr2 (9597963-9598254) | |
| 2069-2352, gnl|Hg17|chr2 (153442919-153443191) | |
| 2069-2352, gnl|Mm7|chr2 (53225738-53226018) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-388, gnl|bosTau2|chr2 (9556958-9557348) | |
| 1-388, gnl|Hg17|chr2 (153400656-153401046) | |
| 1-388, gnl|Mm7|chr2 (53199443-53199833) | |
| 441-579, gnl|bosTau2|chr2 (9570374-9570512) | |
| 441-579, gnl|canFam2|chr19 (56751468-56751559) | |
| 441-579, gnl|canFam2|chr19 (56751405-56751622) | |
| 441-579, gnl|danRer3|chr6 (8811342-8811105) | |
| 441-579, gnl|echTel1|scaffold_318506 (20111-20020) | |
| 441-579, gnl|echTel1|scaffold_318506 (20169-19957) | |
| 441-579, gnl|hg17|chr2 (153416959-153417176) | |
| 441-579, gnl|Hg17|chr2 (153417014-153417152) | |
| 441-579, gnl|hg17|chr8 (81425986-81426077) | |
| 441-579, gnl|loxAfr1|scaffold_67438 (1820-1729) | |
| 441-579, gnl|loxAfr1|scaffold_67438 (1879-1666) | |
| 441-579, gnl|mm7|chr2 (53210234-53210324) | |
| 441-579, gnl|mm7|chr2 (53210192-53210394) | |
| 441-579, gnl|Mm7|chr2 (53210228-53210366) | |
| 441-579, gnl|monDom2|scaffold_2 (44002417-44002639) | |
| 441-579, gnl|oryCun1|scaffold_103526 (10864-10954) | |
| 441-579, gnl|oryCun1|scaffold_190160 (5596-5382) | |
| 441-579, gnl|panTro1|chr13 (42485494-42485711) | |
| 441-579, gnl|panTro1|chr7_random (37178927-37178836) | |
| 441-579, gnl|rheMac2|chr12 (16387867-16388085) | |
| 441-579, gnl|rheMac2|chr8 (82778949-82779040) | |
| 441-579, gnl|rn3|chr3 (34629765-34629856) | |
| 441-579, gnl|rn3|chr3 (34629723-34629925) | |
| 441-579, gnl|xenTro1|scaffold_524 (369735-369922) | |
| 696-1177, gnl|bosTau2|chr2 (9596973-9597460) | |
| 696-1177, gnl|canFam2|chr19 (56761878-56762796) | |
| 696-1177, gnl|dasNov1|scaffold_22169 (50491-51396) | |
| 696-1177, gnl|echTel1|scaffold_318506 (4265-3418) | |
| 696-1177, gnl|hg17|chr2 (153441912-153442828) | |
| 696-1177, gnl|Hg17|chr2 (153441925-153442424) | |
| 696-1177, gnl|loxAfr1|scaffold_42807 (13354-12451) | |
| 696-1177, gnl|mm7|chr2 (53224746-53225648) | |
| 696-1177, gnl|Mm7|chr2 (53224754-53225265) | |
| 696-1177, gnl|monDom2|scaffold_2 (44055170-44056148) | |
| 696-1177, gnl|oryCun1|scaffold_137642 (23788-22914) | |
| 696-1177, gnl|panTro1|chr13 (42510605-42511528) | |
| 696-1177, gnl|rheMac2|chr12 (16413843-16414752) | |
| 696-1177, gnl|rn3|chr3 (34643714-34644609) | |
| 1657-1973, gnl|bosTau2|chr2 (9597635-9597990) | |
| 1657-1973, gnl|canFam2|chr19 (56761878-56762796) | |
| 1657-1973, gnl|dasNov1|scaffold_22169 (50491-51396) | |
| 1657-1973, gnl|echTel1|scaffold_318506 (4265-3418) | |
| 1657-1973, gnl|hg17|chr2 (153441912-153442828) | |
| 1657-1973, gnl|Hg17|chr2 (153442593-153442947) | |
| 1657-1973, gnl|loxAfr1|scaffold_42807 (13354-12451) | |
| 1657-1973, gnl|mm7|chr2 (53224746-53225648) | |
| 1657-1973, gnl|Mm7|chr2 (53225416-53225765) | |
| 1657-1973, gnl|monDom2|scaffold_2 (44055170-44056148) | |
| 1657-1973, gnl|oryCun1|scaffold_137642 (23788-22914) | |
| 1657-1973, gnl|panTro1|chr13 (42510605-42511528) | |
| 1657-1973, gnl|rheMac2|chr12 (16413843-16414752) | |
| 1657-1973, gnl|rn3|chr3 (34643714-34644609) | |
| 2069-2352, gnl|bosTau2|chr2 (9597963-9598254) | |
| 2069-2352, gnl|Hg17|chr2 (153442919-153443191) | |
| 2069-2352, gnl|Mm7|chr2 (53225738-53226018) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| cbl (0.688784) | |
| spl (0.572738) | |
| sag (0.36543) | |
| ski (0.29347) | |
| che (0.272628) | |
| pla (0.267344) | |
| ute (0.265569) | |
| kid (0.259471) | |
| ova (0.258264) | |
| thg (0.253582) | |
| clu (0.239292) | |
| tes (0.207814) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ton (0.1755) | |
| sin (0.174948) | |
| duo (0.172801) | |
| mga (0.160205) | |
| liv (0.146284) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.688784) | |
| spl (0.572738) | |
| sag (0.36543) | |
| ski (0.29347) | |
| che (0.272628) | |
| pla (0.267344) | |
| ute (0.265569) | |
| kid (0.259471) | |
| ova (0.258264) | |
| thg (0.253582) | |
| clu (0.239292) | |
| tes (0.207814) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ton (0.1755) | |
| sin (0.174948) | |
| duo (0.172801) | |
| mga (0.160205) | |
| liv (0.146284) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) |