Non-Coding RNA Search

Ss1.1-Pig3-SRG8013J20.5

Sequence:


               
               CGGGCTCGAGGCAGCTTCACTGGAGGAGTAGAACTTACTAAGGTTTTCCACCTCACTGTC
TATGAACCTGTGCCCATTCCCCAGATCCTGGTCCACTCACCATCCATCACGCAAGGCTGG
TGCAATGTCACCATTGAGTGCAGAACCTCAGGGGACACAGAGGACCTGAAGGTGACCTGG
GAGGGCAAGGGCCTCCCCAGGCAGCTGGAGGAGAGAGTGACACTGGGACCAGCCCCCAAT
TCGTGGATCCTGGCTGTGCATCTGCCCCAGAGCCAGCCCTGCACCAACATCACCTGTGTG
GTCAGCAACGAAGTGGACCAGAAAACTGCCACCTTCGACCTTGGAGAAGTCTGCCACCTC
GGGGACGCCCATGGTTCACTTGGAGAGGCGATTGTTGTTTCCCTACGAGGCATCCTAGGG
TCTGTCGTGGTCATGGTGTTGGTCCTCAGAGGTGGACTGTACATTTGGAAGGTACACAGG
AAGAAGAAGAAGAAGATGGAGACTGCAAGAGGAGCAGGATCGCAAGAGGACTACAGGGTC
CGTGATTGTGGCATCTAGAGTGCAGAACTGAGCCAGCAGGAGTCTCTTGAGGGTCCTACC
CAGGACACCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCTCGAGGCAGCTTCACTGGAGGAGTAGAACTTACTAAGGTTTTCCACCTCACTGTC
TATGAACCTGTGCCCATTCCCCAGATCCTGGTCCACTCACCATCCATCACGCAAGGCTGG
TGCAATGTCACCATTGAGTGCAGAACCTCAGGGGACACAGAGGACCTGAAGGTGACCTGG
GAGGGCAAGGGCCTCCCCAGGCAGCTGGAGGAGAGAGTGACACTGGGACCAGCCCCCAAT
TCGTGGATCCTGGCTGTGCATCTGCCCCAGAGCCAGCCCTGCACCAACATCACCTGTGTG
GTCAGCAACGAAGTGGACCAGAAAACTGCCACCTTCGACCTTGGAGAAGTCTGCCACCTC
GGGGACGCCCATGGTTCACTTGGAGAGGCGATTGTTGTTTCCCTACGAGGCATCCTAGGG
TCTGTCGTGGTCATGGTGTTGGTCCTCAGAGGTGGACTGTACATTTGGAAGGTACACAGG
AAGAAGAAGAAGAAGATGGAGACTGCAAGAGGAGCAGGATCGCAAGAGGACTACAGGGTC
CGTGATTGTGGCATCTAGAGTGCAGAACTGAGCCAGCAGGAGTCTCTTGAGGGTCCTACC
CAGGACACCACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               44-202, - strand, RNAz p=0.857351

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-202, - strand, RNAz p=0.857351

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               44-353, gnl|bosTau2|chr13 (28662566-28662879)
               

               
               44-353, gnl|Hg17|chr1 (153967962-153968269)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-353, gnl|bosTau2|chr13 (28662566-28662879)
               

               
               44-353, gnl|Hg17|chr1 (153967962-153968269)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cmu (0.186393)
               

               
               csp (0.161186)
               

               
               kid (0.129735)
               

               
               cly (0.120642)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               csp (0.161186)
               

               
               kid (0.129735)
               

               
               cly (0.120642)

	44-353, gnl\|bosTau2\|chr13 (28662566-28662879)
	44-353, gnl\|Hg17\|chr1 (153967962-153968269)