Non-Coding RNA Search

Ss1.1-Pig3-SRG8013K09.3

Sequence:


               
               GGGCCGTGTTTATTTTCAAAGTGGAACATTGAAATAAAGGAAGCGTTCTTTAATTCACCC
GTGCAAGCAGAGGGACCCATAGCATCCAGAGACACAGAAGGGTCAGAGCTGATCTGGCAC
AGTGGCCTCCAGTCTTTCCTCCAGGCGTCTCCTTCTCCATGTACTGTGTCATCCGTGACT
CCTGATGCCTCAGTGTCTCCCACTTGGAATCAGTGACACAAATAACTGGCTGGCACTTTT
CCGCCTTCCAGTTGCTAAACTGTATTTATCTGATGGATTCCCGCCGGACCCATACTGAGC
CTGGACTGAAAGTATCTGCCCGGACCATCCATTCTCTCCCTACACTGAAAATCCAACCTC
TTCCCCTCACCCCATTCGGTTCTCCCTCTGTCTGACCTTCAGATGCCCACGCTGGCCTTC
TAAAGCAGTGCCATGGCACCAAGAGACCTGCCACATCTCGCTCTAAAGGGTTGGAACTAT
CAATTCTTAACCATTTTTTTTTTAACGAACCATTTCAAAGTGAACTTGTTATATTGTCTG
TCCTGCGTGTGTCAGAGTTGGGTTTTTGTGGAGGTTCAGAGCAGGCAACAGCACCAAGAT
GCTCTGAGATCCTTGTTCTGAAGTACATTCTTGGTTACCTGTACTTCTGTAGCTGGTGTG
ATGCTGTTAATTGTCTGTACCGCACATCTCCAAACGTCAATAAAAGACTCAAAGAGGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCGTGTTTATTTTCAAAGTGGAACATTGAAATAAAGGAAGCGTTCTTTAATTCACCC
GTGCAAGCAGAGGGACCCATAGCATCCAGAGACACAGAAGGGTCAGAGCTGATCTGGCAC
AGTGGCCTCCAGTCTTTCCTCCAGGCGTCTCCTTCTCCATGTACTGTGTCATCCGTGACT
CCTGATGCCTCAGTGTCTCCCACTTGGAATCAGTGACACAAATAACTGGCTGGCACTTTT
CCGCCTTCCAGTTGCTAAACTGTATTTATCTGATGGATTCCCGCCGGACCCATACTGAGC
CTGGACTGAAAGTATCTGCCCGGACCATCCATTCTCTCCCTACACTGAAAATCCAACCTC
TTCCCCTCACCCCATTCGGTTCTCCCTCTGTCTGACCTTCAGATGCCCACGCTGGCCTTC
TAAAGCAGTGCCATGGCACCAAGAGACCTGCCACATCTCGCTCTAAAGGGTTGGAACTAT
CAATTCTTAACCATTTTTTTTTTAACGAACCATTTCAAAGTGAACTTGTTATATTGTCTG
TCCTGCGTGTGTCAGAGTTGGGTTTTTGTGGAGGTTCAGAGCAGGCAACAGCACCAAGAT
GCTCTGAGATCCTTGTTCTGAAGTACATTCTTGGTTACCTGTACTTCTGTAGCTGGTGTG
ATGCTGTTAATTGTCTGTACCGCACATCTCCAAACGTCAATAAAAGACTCAAAGAGGTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               163-321, - strand, RNAz p=0.873094
               

               
               559-720, + strand, RNAz p=0.880206

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               163-321, - strand, RNAz p=0.873094
               

               
               559-720, + strand, RNAz p=0.880206

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of CR610925, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR610925, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               7-720, gnl|bosTau2|chr2 (1666243-1665538)
               

               
               7-720, gnl|Hg17|chr2 (128415742-128415030)
               

               
               7-720, gnl|Mm7|chr18 (32114486-32115137)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-720, gnl|bosTau2|chr2 (1666243-1665538)
               

               
               7-720, gnl|Hg17|chr2 (128415742-128415030)
               

               
               7-720, gnl|Mm7|chr18 (32114486-32115137)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	163-321, - strand, RNAz p=0.873094
	559-720, + strand, RNAz p=0.880206

	7-720, gnl\|bosTau2\|chr2 (1666243-1665538)
	7-720, gnl\|Hg17\|chr2 (128415742-128415030)
	7-720, gnl\|Mm7\|chr18 (32114486-32115137)