Non-Coding RNA Search

Ss1.1-Pig3-SRG8013K11.5

Sequence:


               
               AAAAATCCTATAGTCCACCTCCCAACCAAGAACAGGGAAGCTTTCTATAATTTGCCTTTT
TTTCTTCTAAGTCTCAGAGGCTTTTAAGTCTCTTTGTATTCCCATTTTTACAAGTTGGGC
TCCTCCAGTAAATGAGACCTCTTGCTGTCCTCAGAAACCGGTTAGGGGATCTCCCTCAAC
TTTCAAATGAACAAAAAAGCCTATGGGATACAATAATGAAATCGACCCCTGCCAGCCAGA
TCCTTGTCACTGTGCTAAAATACAAGGACCCTGCTTCACATATTAGATCCATTGATTTTC
CACACGTGTGACCCTGGTGCCCTTCTTGCCACCCGTGCCCGGTACTCTGCTTGGTGCCCG
GACAGAACTGCTTCCCTTTGTCTCATCAGCACCTCATTACTGAGATGCACCTGATGCTTT
CTGTCACCTTTCTAGCAGTGCTGTTTCCTGAGCTCCAGCTTGCAAGATCACTGGAAGGAA
CCCCCAGGAGCACATTTGGGGTATGACTTTGAAAGCGACTCATTCTGTCTCCAGCCCTGA
AGATTAACAGGGCTTTATAGAGAGCCACCATCCCAAGCTGGTCCACTCAGAGAAATGCCC
CGGGCTGCTGGGAATGGACTGGGACCTTTTGGAGATCAGAGCCATCAGAATCGGGAAGAA
GAGGATTATCTCTCGGCTCAAACACTGGAAAAGCTCCCCCTTGGCAATCCTCCACCATGG
CATGGGCTTACAGCACCAAGAGGGTGTTCTGGTCTTTTCTCTGTGCTACAGAGTAGCATT
TGGCCATCCTCCTCATATAAGGCCATTTTTGATGTCTCTGTGTCGTACGGTTTAAATTGT
TACATTAGATCAGCATTGCTCCAACTAAAACAATTTCACTTGCTCCAGTGAACTATTTCA
GCATAGCACCTGCTGCTTGGACCGCAACTGAGATATGTACATGGCCGGACGAGCCCCCAC
GTCCATCCCACACATCCAGCCTGAGTGCATTTCGAGGGTTGGTCAGGGTACCGTGTGTGG
TACAGGTGGAAACAGTCTGGGGAGAAGACGGTGCTTGTCCATGCTTCCTCCAGCTGTGGT
CACATGGCTCTCTGGGCAGCAAAAAGAAAAGGATTTTGTTGACTTTAGAAGGGCTTTTCC
ATCCCCTGTGTCCTGAAAATCATAATCTTTGAATCTTCCTGAAATCTAACCACTATCTCC
AGGAGTTTCCCAGGCAGCCGCTCTCAGAAATTTCAGAAGCACTGAGAGGACCGAAATCTG
AAATTGCAGAATTCAAGGCAGAATTGCGGGAAGCATATTTAGCTCAACATGAGGAAGCTC
TTTCTAATGAGTCTGTGTAAGTGAACAGGCTGCACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAATCCTATAGTCCACCTCCCAACCAAGAACAGGGAAGCTTTCTATAATTTGCCTTTT
TTTCTTCTAAGTCTCAGAGGCTTTTAAGTCTCTTTGTATTCCCATTTTTACAAGTTGGGC
TCCTCCAGTAAATGAGACCTCTTGCTGTCCTCAGAAACCGGTTAGGGGATCTCCCTCAAC
TTTCAAATGAACAAAAAAGCCTATGGGATACAATAATGAAATCGACCCCTGCCAGCCAGA
TCCTTGTCACTGTGCTAAAATACAAGGACCCTGCTTCACATATTAGATCCATTGATTTTC
CACACGTGTGACCCTGGTGCCCTTCTTGCCACCCGTGCCCGGTACTCTGCTTGGTGCCCG
GACAGAACTGCTTCCCTTTGTCTCATCAGCACCTCATTACTGAGATGCACCTGATGCTTT
CTGTCACCTTTCTAGCAGTGCTGTTTCCTGAGCTCCAGCTTGCAAGATCACTGGAAGGAA
CCCCCAGGAGCACATTTGGGGTATGACTTTGAAAGCGACTCATTCTGTCTCCAGCCCTGA
AGATTAACAGGGCTTTATAGAGAGCCACCATCCCAAGCTGGTCCACTCAGAGAAATGCCC
CGGGCTGCTGGGAATGGACTGGGACCTTTTGGAGATCAGAGCCATCAGAATCGGGAAGAA
GAGGATTATCTCTCGGCTCAAACACTGGAAAAGCTCCCCCTTGGCAATCCTCCACCATGG
CATGGGCTTACAGCACCAAGAGGGTGTTCTGGTCTTTTCTCTGTGCTACAGAGTAGCATT
TGGCCATCCTCCTCATATAAGGCCATTTTTGATGTCTCTGTGTCGTACGGTTTAAATTGT
TACATTAGATCAGCATTGCTCCAACTAAAACAATTTCACTTGCTCCAGTGAACTATTTCA
GCATAGCACCTGCTGCTTGGACCGCAACTGAGATATGTACATGGCCGGACGAGCCCCCAC
GTCCATCCCACACATCCAGCCTGAGTGCATTTCGAGGGTTGGTCAGGGTACCGTGTGTGG
TACAGGTGGAAACAGTCTGGGGAGAAGACGGTGCTTGTCCATGCTTCCTCCAGCTGTGGT
CACATGGCTCTCTGGGCAGCAAAAAGAAAAGGATTTTGTTGACTTTAGAAGGGCTTTTCC
ATCCCCTGTGTCCTGAAAATCATAATCTTTGAATCTTCCTGAAATCTAACCACTATCTCC
AGGAGTTTCCCAGGCAGCCGCTCTCAGAAATTTCAGAAGCACTGAGAGGACCGAAATCTG
AAATTGCAGAATTCAAGGCAGAATTGCGGGAAGCATATTTAGCTCAACATGAGGAAGCTC
TTTCTAATGAGTCTGTGTAAGTGAACAGGCTGCACG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               198-313, - strand, RNAz p=0.877891
               

               
               314-456, - strand, RNAz p=0.995777

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-313, - strand, RNAz p=0.877891
               

               
               314-456, - strand, RNAz p=0.995777

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               360-493, - strand, RNAmicro p=0.988424

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               360-493, - strand, RNAmicro p=0.988424

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC039203, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC039203, -

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               3-1095, gnl|bosTau2|chr4 (10842726-10843809)
               

               
               3-1095, gnl|canFam2|chr14 (38939818-38940623)
               

               
               3-1095, gnl|dasNov1|scaffold_45667 (2053-2805)
               

               
               3-1095, gnl|echTel1|scaffold_314918 (80947-80284)
               

               
               3-1095, gnl|hg17|chr7 (21933018-21933836)
               

               
               3-1095, gnl|Hg17|chr7 (21934154-21933033)
               

               
               3-1095, gnl|loxAfr1|scaffold_16846 (11557-12323)
               

               
               3-1095, gnl|mm7|chr12 (115495369-115494675)
               

               
               3-1095, gnl|oryCun1|scaffold_201552 (233328-232583)
               

               
               3-1095, gnl|panTro1|chr6 (22969593-22970412)
               

               
               3-1095, gnl|rheMac2|chr3 (104078137-104077315)
               

               
               3-1095, gnl|rn3|chr6 (145034632-145033966)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1095, gnl|bosTau2|chr4 (10842726-10843809)
               

               
               3-1095, gnl|canFam2|chr14 (38939818-38940623)
               

               
               3-1095, gnl|dasNov1|scaffold_45667 (2053-2805)
               

               
               3-1095, gnl|echTel1|scaffold_314918 (80947-80284)
               

               
               3-1095, gnl|hg17|chr7 (21933018-21933836)
               

               
               3-1095, gnl|Hg17|chr7 (21934154-21933033)
               

               
               3-1095, gnl|loxAfr1|scaffold_16846 (11557-12323)
               

               
               3-1095, gnl|mm7|chr12 (115495369-115494675)
               

               
               3-1095, gnl|oryCun1|scaffold_201552 (233328-232583)
               

               
               3-1095, gnl|panTro1|chr6 (22969593-22970412)
               

               
               3-1095, gnl|rheMac2|chr3 (104078137-104077315)
               

               
               3-1095, gnl|rn3|chr6 (145034632-145033966)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               lnt (0.142308)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               lnt (0.142308)

	198-313, - strand, RNAz p=0.877891
	314-456, - strand, RNAz p=0.995777

	3-1095, gnl\|bosTau2\|chr4 (10842726-10843809)
	3-1095, gnl\|canFam2\|chr14 (38939818-38940623)
	3-1095, gnl\|dasNov1\|scaffold_45667 (2053-2805)
	3-1095, gnl\|echTel1\|scaffold_314918 (80947-80284)
	3-1095, gnl\|hg17\|chr7 (21933018-21933836)
	3-1095, gnl\|Hg17\|chr7 (21934154-21933033)
	3-1095, gnl\|loxAfr1\|scaffold_16846 (11557-12323)
	3-1095, gnl\|mm7\|chr12 (115495369-115494675)
	3-1095, gnl\|oryCun1\|scaffold_201552 (233328-232583)
	3-1095, gnl\|panTro1\|chr6 (22969593-22970412)
	3-1095, gnl\|rheMac2\|chr3 (104078137-104077315)
	3-1095, gnl\|rn3\|chr6 (145034632-145033966)