Ss1.1-Pig3-SRG8013K13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGAACCAAGGCGCAGGAGGAGGAGTTGAGAGCCGTCGGGCGCCGCGGAGTCAGGCGGCA GCGGCTCCCAGTGCAGGTGACCATGGGAAAGCGTTACTTCTGCGACTACTGTGACCGCTC CTTCCAGGACAACCTCCACAACCGCAAGAAGCACCTGAATGGGCTACAGCACCTCAAGGC CAAGAAGCTCTGGTATGACATGTTCCGAGATGCAGCTGCCATCTTGCTGGATGAGCAGAA CAAGCGGCCCTGCAGGAAGTTTCTACTGACAGGCCAGTGTGACTTCGGCTCCAACTGCAG ATTTTCCCACATGTCAGAGCGAGACCTGCAGGAGCTAAGTATCCAGGTGGAGGAGGAGAG GCGGGCCAGGGAGTGGCCACTAGAAGTCGCCGAGCTCCCTGAGGGCCATCTGGAGGACTG GCTAGAGAAGAGAGCCAAGCGGCTGAGCTCAGCCTCAAGCAGCAGAGCCGAGCCCATCAG AGCCACTGTCTTCCAGTACCCCTTGGGCTGGCCACCTGTCCAGGAGCTGCCTCTGTCCCT GCGGGCACCCCCACCTGGGGGGTGGCCCCTGCAGCCCAGCGTCCAGTGGGGCTGAGCCCC ACATCCCTGGTCAGCTCTCAAGTCAGTCACAGTAAAGATAAGGGCTTGTACTCGGGACAC TGAGGACCCCCTCCTGCTGCACCGCTATTACCTGGCCTGGCCTCACCAAAGCCTGAGTCC CTCCCAGCCAGGTGAAGCCCTGGTCCGGGCTCTGTGCCAGGCAGCTCCTCCCTCCCTCCT TCACAGGACATCTTGGGAAGACTTCCTTTGGTTGTTAATAAAGAAAGTCTGTCCCCAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGAACCAAGGCGCAGGAGGAGGAGTTGAGAGCCGTCGGGCGCCGCGGAGTCAGGCGGCA GCGGCTCCCAGTGCAGGTGACCATGGGAAAGCGTTACTTCTGCGACTACTGTGACCGCTC CTTCCAGGACAACCTCCACAACCGCAAGAAGCACCTGAATGGGCTACAGCACCTCAAGGC CAAGAAGCTCTGGTATGACATGTTCCGAGATGCAGCTGCCATCTTGCTGGATGAGCAGAA CAAGCGGCCCTGCAGGAAGTTTCTACTGACAGGCCAGTGTGACTTCGGCTCCAACTGCAG ATTTTCCCACATGTCAGAGCGAGACCTGCAGGAGCTAAGTATCCAGGTGGAGGAGGAGAG GCGGGCCAGGGAGTGGCCACTAGAAGTCGCCGAGCTCCCTGAGGGCCATCTGGAGGACTG GCTAGAGAAGAGAGCCAAGCGGCTGAGCTCAGCCTCAAGCAGCAGAGCCGAGCCCATCAG AGCCACTGTCTTCCAGTACCCCTTGGGCTGGCCACCTGTCCAGGAGCTGCCTCTGTCCCT GCGGGCACCCCCACCTGGGGGGTGGCCCCTGCAGCCCAGCGTCCAGTGGGGCTGAGCCCC ACATCCCTGGTCAGCTCTCAAGTCAGTCACAGTAAAGATAAGGGCTTGTACTCGGGACAC TGAGGACCCCCTCCTGCTGCACCGCTATTACCTGGCCTGGCCTCACCAAAGCCTGAGTCC CTCCCAGCCAGGTGAAGCCCTGGTCCGGGCTCTGTGCCAGGCAGCTCCTCCCTCCCTCCT TCACAGGACATCTTGGGAAGACTTCCTTTGGTTGTTAATAAAGAAAGTCTGTCCCCAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 504-619, - strand, RNAz p=0.974258 | |
| 659-787, - strand, RNAz p=0.965285 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 504-619, - strand, RNAz p=0.974258 | |
| 659-787, - strand, RNAz p=0.965285 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_182527, - | |
| 3' of NM_182527, - |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 52-212, gnl|bosTau2|chr17 (41621448-41621288) | |
| 52-212, gnl|canFam2|chr26 (25970687-25970835) | |
| 52-212, gnl|danRer3|chr5 (28165977-28166116) | |
| 52-212, gnl|dasNov1|scaffold_5872 (105357-105209) | |
| 52-212, gnl|echTel1|scaffold_313702 (1273-1410) | |
| 52-212, gnl|fr1|chrUn (66545401-66545541) | |
| 52-212, gnl|galGal2|chr15 (10911797-10911650) | |
| 52-212, gnl|hg17|chr22 (28468956-28469104) | |
| 52-212, gnl|Hg17|chr22 (28469117-28468958) | |
| 52-212, gnl|mm7|chr11 (4674521-4674375) | |
| 52-212, gnl|Mm7|chr11 (4674358-4674517) | |
| 52-212, gnl|monDom2|scaffold_89 (3622464-3622601) | |
| 52-212, gnl|oryCun1|scaffold_204435 (36645-36511) | |
| 52-212, gnl|panTro1|chr23 (28559730-28559878) | |
| 52-212, gnl|rheMac2|chr10 (73589870-73590018) | |
| 52-212, gnl|rn3|chr14 (85389888-85389743) | |
| 52-212, gnl|tetNig1|chr4 (1831795-1831950) | |
| 464-837, gnl|bosTau2|chr17 (41611108-41610709) | |
| 464-837, gnl|canFam2|chr26 (25956318-25956729) | |
| 464-837, gnl|dasNov1|scaffold_11853 (59560-59211) | |
| 464-837, gnl|echTel1|scaffold_294358 (89850-89619) | |
| 464-837, gnl|hg17|chr22 (28451383-28451767) | |
| 464-837, gnl|Hg17|chr22 (28451899-28451501) | |
| 464-837, gnl|loxAfr1|scaffold_428 (109097-108779) | |
| 464-837, gnl|mm7|chr11 (4689775-4689467) | |
| 464-837, gnl|panTro1|chr23 (28542184-28542567) | |
| 464-837, gnl|rheMac2|chr10 (73573721-73574096) | |
| 464-837, gnl|rn3|chr14 (85405424-85405134) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 52-212, gnl|bosTau2|chr17 (41621448-41621288) | |
| 52-212, gnl|canFam2|chr26 (25970687-25970835) | |
| 52-212, gnl|danRer3|chr5 (28165977-28166116) | |
| 52-212, gnl|dasNov1|scaffold_5872 (105357-105209) | |
| 52-212, gnl|echTel1|scaffold_313702 (1273-1410) | |
| 52-212, gnl|fr1|chrUn (66545401-66545541) | |
| 52-212, gnl|galGal2|chr15 (10911797-10911650) | |
| 52-212, gnl|hg17|chr22 (28468956-28469104) | |
| 52-212, gnl|Hg17|chr22 (28469117-28468958) | |
| 52-212, gnl|mm7|chr11 (4674521-4674375) | |
| 52-212, gnl|Mm7|chr11 (4674358-4674517) | |
| 52-212, gnl|monDom2|scaffold_89 (3622464-3622601) | |
| 52-212, gnl|oryCun1|scaffold_204435 (36645-36511) | |
| 52-212, gnl|panTro1|chr23 (28559730-28559878) | |
| 52-212, gnl|rheMac2|chr10 (73589870-73590018) | |
| 52-212, gnl|rn3|chr14 (85389888-85389743) | |
| 52-212, gnl|tetNig1|chr4 (1831795-1831950) | |
| 464-837, gnl|bosTau2|chr17 (41611108-41610709) | |
| 464-837, gnl|canFam2|chr26 (25956318-25956729) | |
| 464-837, gnl|dasNov1|scaffold_11853 (59560-59211) | |
| 464-837, gnl|echTel1|scaffold_294358 (89850-89619) | |
| 464-837, gnl|hg17|chr22 (28451383-28451767) | |
| 464-837, gnl|Hg17|chr22 (28451899-28451501) | |
| 464-837, gnl|loxAfr1|scaffold_428 (109097-108779) | |
| 464-837, gnl|mm7|chr11 (4689775-4689467) | |
| 464-837, gnl|panTro1|chr23 (28542184-28542567) | |
| 464-837, gnl|rheMac2|chr10 (73573721-73574096) | |
| 464-837, gnl|rn3|chr14 (85405424-85405134) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nbm (0.198649) | |
| fcc (0.197785) | |
| nje (0.16592) | |
| ute (0.132784) | |
| cov (0.132153) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.198649) | |
| fcc (0.197785) | |
| nje (0.16592) | |
| ute (0.132784) | |
| cov (0.132153) |