Ss1.1-Pig3-SRG8013K22.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGTGTGTTGCTGGTTAGTGCTTCTTCCCCGCCGGAGCGACGGGATAAAGAGCGGCGTC ATGGTCGAGGAGGTACAGAAACACTCTGTGCACACACTTGTGTTCAGGTCATTGAAGAGG ACCCATGACATGTTTGTGGCTGATAATGGAAAACCTGTGCCTTTGGATGAAGAGAGTCAC AAACGAAAAATGGCAATCAAACTGCGTAATGAGTATGGTCCTGTGTTGCATATGCCTACT TCAAAAGAAAATTTGAAAGAGAAGGGCCCTCAGAATGCATCAGATTCATATGGACACAAA CAGTATCCTGCCAATCAAGGACAAGAGGTTGAATATTTGGTGACAGGGACACATCCATAT CCACCAGGACCTGGGGTTGCACTGACAGCAGACACTAAGATCCAAAGAATGCCAAGTGAA TCAGCTGCACAGTCCTTAGCTGTGGCATTACCTACGTCTCAGGCCAGGGTTGATGCAAAT CGTAGTGCACCTGCTGCAGGTGAATACCGACATCCAGGGGCTTCTGACCGCTCACAGTCT GCGGGCGCGGTTGTTGTGGATGGTGGCAATGCCAAGAACTCTGCACTGATGGCTAAAAAA GCCCCTACAATGCCAAAGCCCCAGTGGCACCCACCGTGGAAACTCTACAGGGTGATCAGT GGGCACCTTGGCTGGGTTCGCTGTATTGCTGTGGAACCTGGAAATCAATGGTTTGTTACT GGATCTGCTGACAGAACTATAAAGATCTGGGACTTGGCTAGTGGCAAGTTAAAGCTGTCC TTAACAGGGCACATCAGCACGGTGCGTGGCGTGATAGTGAGCACGAGGAGCCCGTACCTC TTCTCCTGCGGGGAAGACAAACAAGTCAAGTGCTGGGATCTGGAGTATAATAAGGTTATA AGGCACTATCACGGACATCTGAGCGCAGTGTATGGACTGGACTTGCACCCGACAATCGAC GTGCTGGTGACCTGTAGCCGAGACTCAACTGCCCGGATTTGGGATGTAAGAACTAAAGCC AGCGTACACACGTTATCTGGACATACTAATGCGGTTGCTACAGTGAGGTGTCAGGCTGCA GAACCACAAATTATTACTGGAAGCCATGATACTACAATACGATTATGGGATTTGGTGGCT GGAAAAACAAGAGTCACGTTAACGAATCATAAAAAATCAGTCAGGGCTGTGGTGTTACAT CCAAGACATTATACATTTGCATCGGGTTCGCCAGATAACATAAAACAGTGGAAATTCCCA GATGGAAGTTTCATTCAAAATCTTTCTGGTCACAATGCTATTATTAACACATTGACAGTA AATTCCGACGGAGTGCTTGTATCTGGAGCTGACAATGGCACTATGCATCTTTGGGATTGG AGAACTGGCTACAATTTCCAGAGAGTTCACGCAGCAGTGCAGCCGGGGTCTTTGGACAGT GAGTCAGGAATATTTGCTTGTGCTTTTGATCAGTCTGAAAGTCGATTACTGACAGCCGAA GCTGACAAAACCATTAAAGTGTACAGAGAGGATGACACAGCGACAGAAGAAACTCATCCA GTCAGCTGGAAGCCAGAAATTATCAAGAGAAAGAGATTTTAATGTGGCATCTTCATGGTG GTTCCAATTTTGTTTTTGTTTTAATTTTTTTTTATTTTTATTTTTTTTTCTTAGCTTGGC GTTGATGAGACTATCCAGTCATTTGTGCTCTGGCTAGGAATATAACACAAAAACTCACAC GCTTGAATCATTGCTTCTTCCTATTTTACAATAAACTTTCTTCCCATGTTTTTATTTCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGTGTGTTGCTGGTTAGTGCTTCTTCCCCGCCGGAGCGACGGGATAAAGAGCGGCGTC ATGGTCGAGGAGGTACAGAAACACTCTGTGCACACACTTGTGTTCAGGTCATTGAAGAGG ACCCATGACATGTTTGTGGCTGATAATGGAAAACCTGTGCCTTTGGATGAAGAGAGTCAC AAACGAAAAATGGCAATCAAACTGCGTAATGAGTATGGTCCTGTGTTGCATATGCCTACT TCAAAAGAAAATTTGAAAGAGAAGGGCCCTCAGAATGCATCAGATTCATATGGACACAAA CAGTATCCTGCCAATCAAGGACAAGAGGTTGAATATTTGGTGACAGGGACACATCCATAT CCACCAGGACCTGGGGTTGCACTGACAGCAGACACTAAGATCCAAAGAATGCCAAGTGAA TCAGCTGCACAGTCCTTAGCTGTGGCATTACCTACGTCTCAGGCCAGGGTTGATGCAAAT CGTAGTGCACCTGCTGCAGGTGAATACCGACATCCAGGGGCTTCTGACCGCTCACAGTCT GCGGGCGCGGTTGTTGTGGATGGTGGCAATGCCAAGAACTCTGCACTGATGGCTAAAAAA GCCCCTACAATGCCAAAGCCCCAGTGGCACCCACCGTGGAAACTCTACAGGGTGATCAGT GGGCACCTTGGCTGGGTTCGCTGTATTGCTGTGGAACCTGGAAATCAATGGTTTGTTACT GGATCTGCTGACAGAACTATAAAGATCTGGGACTTGGCTAGTGGCAAGTTAAAGCTGTCC TTAACAGGGCACATCAGCACGGTGCGTGGCGTGATAGTGAGCACGAGGAGCCCGTACCTC TTCTCCTGCGGGGAAGACAAACAAGTCAAGTGCTGGGATCTGGAGTATAATAAGGTTATA AGGCACTATCACGGACATCTGAGCGCAGTGTATGGACTGGACTTGCACCCGACAATCGAC GTGCTGGTGACCTGTAGCCGAGACTCAACTGCCCGGATTTGGGATGTAAGAACTAAAGCC AGCGTACACACGTTATCTGGACATACTAATGCGGTTGCTACAGTGAGGTGTCAGGCTGCA GAACCACAAATTATTACTGGAAGCCATGATACTACAATACGATTATGGGATTTGGTGGCT GGAAAAACAAGAGTCACGTTAACGAATCATAAAAAATCAGTCAGGGCTGTGGTGTTACAT CCAAGACATTATACATTTGCATCGGGTTCGCCAGATAACATAAAACAGTGGAAATTCCCA GATGGAAGTTTCATTCAAAATCTTTCTGGTCACAATGCTATTATTAACACATTGACAGTA AATTCCGACGGAGTGCTTGTATCTGGAGCTGACAATGGCACTATGCATCTTTGGGATTGG AGAACTGGCTACAATTTCCAGAGAGTTCACGCAGCAGTGCAGCCGGGGTCTTTGGACAGT GAGTCAGGAATATTTGCTTGTGCTTTTGATCAGTCTGAAAGTCGATTACTGACAGCCGAA GCTGACAAAACCATTAAAGTGTACAGAGAGGATGACACAGCGACAGAAGAAACTCATCCA GTCAGCTGGAAGCCAGAAATTATCAAGAGAAAGAGATTTTAATGTGGCATCTTCATGGTG GTTCCAATTTTGTTTTTGTTTTAATTTTTTTTTATTTTTATTTTTTTTTCTTAGCTTGGC GTTGATGAGACTATCCAGTCATTTGTGCTCTGGCTAGGAATATAACACAAAAACTCACAC GCTTGAATCATTGCTTCTTCCTATTTTACAATAAACTTTCTTCCCATGTTTTTATTTCTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 549-655, - strand, RNAz p=0.627989 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 549-655, - strand, RNAz p=0.627989 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 175-320, gnl|bosTau2|chr17 (558039-558184) | |
| 175-320, gnl|Hg17|chr4 (155826612-155826467) | |
| 175-320, gnl|Mm7|chr3 (83163339-83163484) | |
| 549-655, gnl|bosTau2|chr17 (563348-563454) | |
| 549-655, gnl|Hg17|chr4 (155823304-155823198) | |
| 549-655, gnl|Mm7|chr3 (83170566-83170669) | |
| 743-896, gnl|bosTau2|chr17 (568231-568384) | |
| 743-896, gnl|Hg17|chr4 (155819693-155819540) | |
| 743-896, gnl|Mm7|chr3 (83172681-83172834) | |
| 1094-1211, gnl|bosTau2|chr17 (569684-569801) | |
| 1094-1211, gnl|canFam2|chr15 (55222669-55222827) | |
| 1094-1211, gnl|danRer3|chr1 (24769280-24769124) | |
| 1094-1211, gnl|dasNov1|scaffold_2284 (85326-85494) | |
| 1094-1211, gnl|echTel1|scaffold_183239 (2837-2953) | |
| 1094-1211, gnl|fr1|chrUn (13474781-13474651) | |
| 1094-1211, gnl|galGal2|chr4 (20901401-20901541) | |
| 1094-1211, gnl|hg17|chr4 (155817830-155817989) | |
| 1094-1211, gnl|Hg17|chr4 (155817976-155817859) | |
| 1094-1211, gnl|loxAfr1|scaffold_967 (57421-57553) | |
| 1094-1211, gnl|mm7|chr3 (83174516-83174361) | |
| 1094-1211, gnl|Mm7|chr3 (83174372-83174489) | |
| 1094-1211, gnl|monDom2|scaffold_9 (25083616-25083765) | |
| 1094-1211, gnl|oryCun1|scaffold_197720 (77683-77527) | |
| 1094-1211, gnl|panTro1|chr3 (173181609-173181768) | |
| 1094-1211, gnl|rheMac2|chr5 (146741136-146741295) | |
| 1094-1211, gnl|rn3|chr2 (174743780-174743627) | |
| 1094-1211, gnl|tetNig1|chr18 (8030094-8029969) | |
| 1094-1211, gnl|xenTro1|scaffold_93 (774446-774296) | |
| 1347-1541, gnl|bosTau2|chr17 (571352-571546) | |
| 1347-1541, gnl|canFam2|chr15 (55220676-55220896) | |
| 1347-1541, gnl|danRer3|chr1 (24770256-24770039) | |
| 1347-1541, gnl|dasNov1|scaffold_2284 (83670-83890) | |
| 1347-1541, gnl|echTel1|scaffold_288631 (79295-79075) | |
| 1347-1541, gnl|fr1|chrUn (13475399-13475190) | |
| 1347-1541, gnl|galGal2|chr4 (20897796-20898012) | |
| 1347-1541, gnl|hg17|chr4 (155816031-155816251) | |
| 1347-1541, gnl|Hg17|chr4 (155816238-155816044) | |
| 1347-1541, gnl|loxAfr1|scaffold_967 (55925-56145) | |
| 1347-1541, gnl|mm7|chr3 (83176077-83175862) | |
| 1347-1541, gnl|Mm7|chr3 (83175873-83176067) | |
| 1347-1541, gnl|monDom2|scaffold_9 (25079814-25080034) | |
| 1347-1541, gnl|oryCun1|scaffold_179461 (29885-29696) | |
| 1347-1541, gnl|panTro1|chr3 (173179810-173180030) | |
| 1347-1541, gnl|rheMac2|chr5 (146739329-146739549) | |
| 1347-1541, gnl|rn3|chr2 (174745896-174745677) | |
| 1347-1541, gnl|tetNig1|chr18 (8030734-8030526) | |
| 1347-1541, gnl|xenTro1|scaffold_93 (776188-775975) | |
| 1649-1800, gnl|bosTau2|chr17 (572244-572394) | |
| 1649-1800, gnl|Hg17|chr4 (155815430-155815247) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 175-320, gnl|bosTau2|chr17 (558039-558184) | |
| 175-320, gnl|Hg17|chr4 (155826612-155826467) | |
| 175-320, gnl|Mm7|chr3 (83163339-83163484) | |
| 549-655, gnl|bosTau2|chr17 (563348-563454) | |
| 549-655, gnl|Hg17|chr4 (155823304-155823198) | |
| 549-655, gnl|Mm7|chr3 (83170566-83170669) | |
| 743-896, gnl|bosTau2|chr17 (568231-568384) | |
| 743-896, gnl|Hg17|chr4 (155819693-155819540) | |
| 743-896, gnl|Mm7|chr3 (83172681-83172834) | |
| 1094-1211, gnl|bosTau2|chr17 (569684-569801) | |
| 1094-1211, gnl|canFam2|chr15 (55222669-55222827) | |
| 1094-1211, gnl|danRer3|chr1 (24769280-24769124) | |
| 1094-1211, gnl|dasNov1|scaffold_2284 (85326-85494) | |
| 1094-1211, gnl|echTel1|scaffold_183239 (2837-2953) | |
| 1094-1211, gnl|fr1|chrUn (13474781-13474651) | |
| 1094-1211, gnl|galGal2|chr4 (20901401-20901541) | |
| 1094-1211, gnl|hg17|chr4 (155817830-155817989) | |
| 1094-1211, gnl|Hg17|chr4 (155817976-155817859) | |
| 1094-1211, gnl|loxAfr1|scaffold_967 (57421-57553) | |
| 1094-1211, gnl|mm7|chr3 (83174516-83174361) | |
| 1094-1211, gnl|Mm7|chr3 (83174372-83174489) | |
| 1094-1211, gnl|monDom2|scaffold_9 (25083616-25083765) | |
| 1094-1211, gnl|oryCun1|scaffold_197720 (77683-77527) | |
| 1094-1211, gnl|panTro1|chr3 (173181609-173181768) | |
| 1094-1211, gnl|rheMac2|chr5 (146741136-146741295) | |
| 1094-1211, gnl|rn3|chr2 (174743780-174743627) | |
| 1094-1211, gnl|tetNig1|chr18 (8030094-8029969) | |
| 1094-1211, gnl|xenTro1|scaffold_93 (774446-774296) | |
| 1347-1541, gnl|bosTau2|chr17 (571352-571546) | |
| 1347-1541, gnl|canFam2|chr15 (55220676-55220896) | |
| 1347-1541, gnl|danRer3|chr1 (24770256-24770039) | |
| 1347-1541, gnl|dasNov1|scaffold_2284 (83670-83890) | |
| 1347-1541, gnl|echTel1|scaffold_288631 (79295-79075) | |
| 1347-1541, gnl|fr1|chrUn (13475399-13475190) | |
| 1347-1541, gnl|galGal2|chr4 (20897796-20898012) | |
| 1347-1541, gnl|hg17|chr4 (155816031-155816251) | |
| 1347-1541, gnl|Hg17|chr4 (155816238-155816044) | |
| 1347-1541, gnl|loxAfr1|scaffold_967 (55925-56145) | |
| 1347-1541, gnl|mm7|chr3 (83176077-83175862) | |
| 1347-1541, gnl|Mm7|chr3 (83175873-83176067) | |
| 1347-1541, gnl|monDom2|scaffold_9 (25079814-25080034) | |
| 1347-1541, gnl|oryCun1|scaffold_179461 (29885-29696) | |
| 1347-1541, gnl|panTro1|chr3 (173179810-173180030) | |
| 1347-1541, gnl|rheMac2|chr5 (146739329-146739549) | |
| 1347-1541, gnl|rn3|chr2 (174745896-174745677) | |
| 1347-1541, gnl|tetNig1|chr18 (8030734-8030526) | |
| 1347-1541, gnl|xenTro1|scaffold_93 (776188-775975) | |
| 1649-1800, gnl|bosTau2|chr17 (572244-572394) | |
| 1649-1800, gnl|Hg17|chr4 (155815430-155815247) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| vin (0.332557) | |
| fce (0.271592) | |
| ova (0.258264) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| gul (0.177588) | |
| sin (0.174948) | |
| cut (0.169924) | |
| fco (0.157208) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| kid (0.129735) | |
| cbl (0.114797) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.332557) | |
| fce (0.271592) | |
| ova (0.258264) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| gul (0.177588) | |
| sin (0.174948) | |
| cut (0.169924) | |
| fco (0.157208) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| kid (0.129735) | |
| cbl (0.114797) | |
| cty (0.10408) | |
| ldo (0.0970026) |