Non-Coding RNA Search

Ss1.1-Pig3-SRG8013L07.5

Sequence:


               
               TTTGCTTTACGGGCCAGGTAGCCGTTGCAGGCAGGGTCAGTGCCACTTGGGCCCAGCCAA
GGTCACCGAGGAGTGACAATTTCAGGGCGAGCCCTGGGTCCTGACAGACTCTTGGAATCT
TGACTCTGCTCTGCGTGCGCCACCTGTTAGAGCAAGATAGTGTTGCCTCTGGGGTGGTAC
CGAAACCAGCTCCTGCAAGGAGTGGAAGAGATTTCTTAGCGGGTCGAGGCATCCGCAGGA
GCGGCCGGGTGGCGGGAGAGGCCGTTACGGGAACCGGAGCTGCGGGTTAAGCTTGATCAA
GATGACAACTTCCCAAAAGCACCGAGATTTCGTGGCAGAGCCCATGGGGGAAAAGCCAGT
GGGAAGCCTGGCCGGGATTGGTGACGTACTGGGCAAGAAGCTGGAGGAAAGGGGCTTTGA
CAAGGCCTATGTGGTCCTTGGCCAGTTTCTGGTGCTCAAGAAAGATGAAGACCTCTTCCG
GGAATGGCTGAAGGACACGTGTGGCGCCAATGCCAAGCAGTCGCGGGACTGCTTCGGGTG
CCTCCGGGAGTGGTGTGATGCCTTCTTGTGATGCCCTCCGGGGAGCCCCCGACCCCAAGC
CCCAGCATTGAGTCTCCAGAGTTTGCAGCCAAGCCAGGACTCCTCCCCCATCCTCTACAA
AGGAAAAGATTGCTGTTGTGTGCACTTCCAACGTACTCCAGCATCTTTTGGGAGTTCTCT
CCCCTCACCATGTCACCTTTTTTGGAATTCTCACACTTGCATGCATCTCCCTTCTCCTTT
CCTTGCCAGTTTCATGTCAGCAATTACCAGCTTTTCTGAGTGAATTCCTGGTCCTGGCCC
TTACCCCTACCCTCACTTCTGATCTGTTTTATGCCATGTTTGGCCCTCTTTTTGGCAGAA
CAGTTCCTGTCCTTGTAAAGTTTTCTAAATCAATAAAGTCAGTGGCCTTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGCTTTACGGGCCAGGTAGCCGTTGCAGGCAGGGTCAGTGCCACTTGGGCCCAGCCAA
GGTCACCGAGGAGTGACAATTTCAGGGCGAGCCCTGGGTCCTGACAGACTCTTGGAATCT
TGACTCTGCTCTGCGTGCGCCACCTGTTAGAGCAAGATAGTGTTGCCTCTGGGGTGGTAC
CGAAACCAGCTCCTGCAAGGAGTGGAAGAGATTTCTTAGCGGGTCGAGGCATCCGCAGGA
GCGGCCGGGTGGCGGGAGAGGCCGTTACGGGAACCGGAGCTGCGGGTTAAGCTTGATCAA
GATGACAACTTCCCAAAAGCACCGAGATTTCGTGGCAGAGCCCATGGGGGAAAAGCCAGT
GGGAAGCCTGGCCGGGATTGGTGACGTACTGGGCAAGAAGCTGGAGGAAAGGGGCTTTGA
CAAGGCCTATGTGGTCCTTGGCCAGTTTCTGGTGCTCAAGAAAGATGAAGACCTCTTCCG
GGAATGGCTGAAGGACACGTGTGGCGCCAATGCCAAGCAGTCGCGGGACTGCTTCGGGTG
CCTCCGGGAGTGGTGTGATGCCTTCTTGTGATGCCCTCCGGGGAGCCCCCGACCCCAAGC
CCCAGCATTGAGTCTCCAGAGTTTGCAGCCAAGCCAGGACTCCTCCCCCATCCTCTACAA
AGGAAAAGATTGCTGTTGTGTGCACTTCCAACGTACTCCAGCATCTTTTGGGAGTTCTCT
CCCCTCACCATGTCACCTTTTTTGGAATTCTCACACTTGCATGCATCTCCCTTCTCCTTT
CCTTGCCAGTTTCATGTCAGCAATTACCAGCTTTTCTGAGTGAATTCCTGGTCCTGGCCC
TTACCCCTACCCTCACTTCTGATCTGTTTTATGCCATGTTTGGCCCTCTTTTTGGCAGAA
CAGTTCCTGTCCTTGTAAAGTTTTCTAAATCAATAAAGTCAGTGGCCTTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|33327729|gb|AAQ09227.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33327729|gb|AAQ09227.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               328-444, + strand, RNAz p=0.764655

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               328-444, + strand, RNAz p=0.764655

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-215, gnl|bosTau2|chr29 (38835712-38835927)
               

               
               1-215, gnl|Hg17|chr11 (65526904-65527106)
               

               
               1-215, gnl|Mm7|chr19 (5261103-5260911)
               


               
               218-517, gnl|bosTau2|chr18 (38333984-38333685)
               

               
               218-517, gnl|Hg17|chr10 (135047375-135047078)
               

               
               218-517, gnl|Mm7|chr19 (5261440-5259872)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-215, gnl|bosTau2|chr29 (38835712-38835927)
               

               
               1-215, gnl|Hg17|chr11 (65526904-65527106)
               

               
               1-215, gnl|Mm7|chr19 (5261103-5260911)
               


               
               218-517, gnl|bosTau2|chr18 (38333984-38333685)
               

               
               218-517, gnl|Hg17|chr10 (135047375-135047078)
               

               
               218-517, gnl|Mm7|chr19 (5261440-5259872)

Expressed library(ies): 46 entry(ies)

More info

Expressed library(ies): 46 entry(ies)

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               hlv (1.25331)
               

               
               eje (0.889504)
               

               
               pty (0.856287)
               

               
               ecc (0.805246)
               

               
               cly (0.603209)
               

               
               nbm (0.595948)
               

               
               nep (0.551775)
               

               
               ton (0.526501)
               

               
               ese (0.506009)
               

               
               nje (0.49776)
               

               
               cje (0.495704)
               

               
               ebs (0.473205)
               

               
               cli (0.458435)
               

               
               cag (0.453583)
               

               
               nca (0.410621)
               

               
               ute (0.398353)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               med (0.348756)
               

               
               jca (0.34188)
               

               
               csp (0.322373)
               

               
               bfe (0.299715)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               clu (0.239292)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fli (0.202881)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

Expressed library(ies): 46 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (1.25331)
               

               
               eje (0.889504)
               

               
               pty (0.856287)
               

               
               ecc (0.805246)
               

               
               cly (0.603209)
               

               
               nbm (0.595948)
               

               
               nep (0.551775)
               

               
               ton (0.526501)
               

               
               ese (0.506009)
               

               
               nje (0.49776)
               

               
               cje (0.495704)
               

               
               ebs (0.473205)
               

               
               cli (0.458435)
               

               
               cag (0.453583)
               

               
               nca (0.410621)
               

               
               ute (0.398353)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               med (0.348756)
               

               
               jca (0.34188)
               

               
               csp (0.322373)
               

               
               bfe (0.299715)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               clu (0.239292)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fli (0.202881)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

	1-215, gnl\|bosTau2\|chr29 (38835712-38835927)
	1-215, gnl\|Hg17\|chr11 (65526904-65527106)
	1-215, gnl\|Mm7\|chr19 (5261103-5260911)

	218-517, gnl\|bosTau2\|chr18 (38333984-38333685)
	218-517, gnl\|Hg17\|chr10 (135047375-135047078)
	218-517, gnl\|Mm7\|chr19 (5261440-5259872)

	hlv (1.25331)
	eje (0.889504)
	pty (0.856287)
	ecc (0.805246)
	cly (0.603209)
	nbm (0.595948)
	nep (0.551775)
	ton (0.526501)
	ese (0.506009)
	nje (0.49776)
	cje (0.495704)
	ebs (0.473205)
	cli (0.458435)
	cag (0.453583)
	nca (0.410621)
	ute (0.398353)
	col (0.390016)
	elu (0.385356)
	nlu (0.383362)
	fty (0.351679)
	ill (0.351185)
	med (0.348756)
	jca (0.34188)
	csp (0.322373)
	bfe (0.299715)
	hyp (0.285673)
	lnt (0.284616)
	cga (0.279096)
	fce (0.271592)
	ssp (0.271039)
	eep (0.245128)
	eru (0.240096)
	clu (0.239292)
	ece (0.229305)
	nms (0.213858)
	fli (0.202881)
	duo (0.172801)
	mcp (0.170648)
	eye (0.170503)
	nco (0.161734)
	cst (0.140036)
	che (0.136314)
	ste (0.135208)
	nmm (0.132802)
	cov (0.132153)
	jej (0.0989218)