Ss1.1-Pig3-SRG8013L14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAAGATCAAATCCCTGGTGGCCCTGCTGGTGGAAACCCAGATGAAGAAGTTGGAGATC AAACTCCGGCACTTTGAGGAGCTAGAGACGATCATGGACCGGGAGCGAGAAGCGCTCGAG TATCAGAGGCAGCAGCTCCTGGCCGACAGACAAGCCTTCCACATGGAGCAGCTAAAGTAT GCAGAGATGCGGGCCCGGCAGCAGCACTTCCAGCAAATGCACCAACAGCAGCAGCAGCCA CCACCGGCCCTGCCCCCAGGCTCCCAGCCTATCCCACCTACAGGCGCTGCAGGGCCACCG ACTGTCCATGGCTTGGCTATGGCTCCGGCTTCTGTGGCCCCTGCTCCTGCCGGCAGCGGG GCCCCTCCCGGAAGCTTGGGCCCCTCTGAACAGATTGGGCCGGCAGGGTCAGCTGTGGGG CCACAGCAGCAACAACCAGCTGGAGCCCCCCAGCCTGGGGCAGTCCCACCAGGGGTACCC CCCCCTGGACCCCATGGCCCCTCACCGTTTCCCAACCAACAAACTCCTCCCTCAATGATG CCAGGGGCAGTGCCAGGCAGCGGGCACCCAGGCGTGGCGGGTAATGCTACTCCCCTGCCT CCAGATCCCACGGCCCCGAGCCCAGGCACAGTCACCCCTGTGCCACCCCCACAGTGAGGA GCCAGCCAGACATCTCTCCCCCTCACCCCCCAAGGAGATCAAGGTTCCAGAAGCAGCCCT CTCCCCACCACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAAGATCAAATCCCTGGTGGCCCTGCTGGTGGAAACCCAGATGAAGAAGTTGGAGATC AAACTCCGGCACTTTGAGGAGCTAGAGACGATCATGGACCGGGAGCGAGAAGCGCTCGAG TATCAGAGGCAGCAGCTCCTGGCCGACAGACAAGCCTTCCACATGGAGCAGCTAAAGTAT GCAGAGATGCGGGCCCGGCAGCAGCACTTCCAGCAAATGCACCAACAGCAGCAGCAGCCA CCACCGGCCCTGCCCCCAGGCTCCCAGCCTATCCCACCTACAGGCGCTGCAGGGCCACCG ACTGTCCATGGCTTGGCTATGGCTCCGGCTTCTGTGGCCCCTGCTCCTGCCGGCAGCGGG GCCCCTCCCGGAAGCTTGGGCCCCTCTGAACAGATTGGGCCGGCAGGGTCAGCTGTGGGG CCACAGCAGCAACAACCAGCTGGAGCCCCCCAGCCTGGGGCAGTCCCACCAGGGGTACCC CCCCCTGGACCCCATGGCCCCTCACCGTTTCCCAACCAACAAACTCCTCCCTCAATGATG CCAGGGGCAGTGCCAGGCAGCGGGCACCCAGGCGTGGCGGGTAATGCTACTCCCCTGCCT CCAGATCCCACGGCCCCGAGCCCAGGCACAGTCACCCCTGTGCCACCCCCACAGTGAGGA GCCAGCCAGACATCTCTCCCCCTCACCCCCCAAGGAGATCAAGGTTCCAGAAGCAGCCCT CTCCCCACCACT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 346-497, - strand, RNAz p=0.950977 | |
| 589-732, - strand, RNAz p=0.867609 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 346-497, - strand, RNAz p=0.950977 | |
| 589-732, - strand, RNAz p=0.867609 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-113, gnl|bosTau2|chr5 (33452438-33452550) | |
| 1-113, gnl|canFam2|chr10 (3467972-3468073) | |
| 1-113, gnl|danRer3|chr6 (20413394-20413494) | |
| 1-113, gnl|dasNov1|scaffold_51582 (46033-46152) | |
| 1-113, gnl|echTel1|scaffold_289282 (17007-16906) | |
| 1-113, gnl|fr1|chrUn (40807039-40806947) | |
| 1-113, gnl|hg17|chr12 (54848093-54848196) | |
| 1-113, gnl|Hg17|chr12 (54848224-54848112) | |
| 1-113, gnl|loxAfr1|scaffold_1805 (119202-119100) | |
| 1-113, gnl|mm7|chr10 (127987144-127987041) | |
| 1-113, gnl|Mm7|chr10 (127987011-127987123) | |
| 1-113, gnl|monDom2|scaffold_5 (82411432-82411530) | |
| 1-113, gnl|oryCun1|scaffold_185462 (428-318) | |
| 1-113, gnl|panTro1|chr10 (56097447-56097550) | |
| 1-113, gnl|rheMac2|chr11 (53226595-53226698) | |
| 1-113, gnl|rn3|chr7 (1767705-1767611) | |
| 1-113, gnl|tetNig1|chr11 (6608764-6608865) | |
| 1-113, gnl|xenTro1|scaffold_85 (2236554-2236648) | |
| 346-497, gnl|bosTau2|chr5 (33453552-33453703) | |
| 346-497, gnl|Hg17|chr12 (54845519-54845368) | |
| 346-497, gnl|Mm7|chr10 (127989191-127989342) | |
| 589-732, gnl|bosTau2|chr5 (33455016-33455162) | |
| 589-732, gnl|Hg17|chr12 (54843808-54843665) | |
| 589-732, gnl|Mm7|chr10 (127990609-127990751) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-113, gnl|bosTau2|chr5 (33452438-33452550) | |
| 1-113, gnl|canFam2|chr10 (3467972-3468073) | |
| 1-113, gnl|danRer3|chr6 (20413394-20413494) | |
| 1-113, gnl|dasNov1|scaffold_51582 (46033-46152) | |
| 1-113, gnl|echTel1|scaffold_289282 (17007-16906) | |
| 1-113, gnl|fr1|chrUn (40807039-40806947) | |
| 1-113, gnl|hg17|chr12 (54848093-54848196) | |
| 1-113, gnl|Hg17|chr12 (54848224-54848112) | |
| 1-113, gnl|loxAfr1|scaffold_1805 (119202-119100) | |
| 1-113, gnl|mm7|chr10 (127987144-127987041) | |
| 1-113, gnl|Mm7|chr10 (127987011-127987123) | |
| 1-113, gnl|monDom2|scaffold_5 (82411432-82411530) | |
| 1-113, gnl|oryCun1|scaffold_185462 (428-318) | |
| 1-113, gnl|panTro1|chr10 (56097447-56097550) | |
| 1-113, gnl|rheMac2|chr11 (53226595-53226698) | |
| 1-113, gnl|rn3|chr7 (1767705-1767611) | |
| 1-113, gnl|tetNig1|chr11 (6608764-6608865) | |
| 1-113, gnl|xenTro1|scaffold_85 (2236554-2236648) | |
| 346-497, gnl|bosTau2|chr5 (33453552-33453703) | |
| 346-497, gnl|Hg17|chr12 (54845519-54845368) | |
| 346-497, gnl|Mm7|chr10 (127989191-127989342) | |
| 589-732, gnl|bosTau2|chr5 (33455016-33455162) | |
| 589-732, gnl|Hg17|chr12 (54843808-54843665) | |
| 589-732, gnl|Mm7|chr10 (127990609-127990751) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) | |
| ebs (0.118301) |