Non-Coding RNA Search

Ss1.1-Pig3-SRG8013L17.3.5

Sequence:


               
               GCAGCCAGGCACGAGCACCAGTTGATGCTGATGAGGCAAGATTTAATGAGGCGTCAAGAA
GAACTCAGACGCTTGGAAGAACTAAGAAACCAAGAGCTGCAAAAACGGAAGCAAATACAG
CTAAGGCATGAGGAAGAGCATCGTCGTCGTGAGGAGGAAATGATCCGCCACCGGGAGCAG
GAGGAACTGCGGCGGCAGCAGGAGGGCTTTAAGCCGAACTATATGGAAAACAGAGAACAG
GAAATGAGAATGGGTGATATGGGTCCCCGTGGAGCAATAAACATGGGAGATGCGTTTAGC
CCAGCACCTGCTGGTAACCAAGGTCCTCCTCCAATGATGGGTATGAATATGAACAACAGA
GGAACTATACCTGGCCCGCCAATGGGTCCTGGTCCTGCCATGGGGCCAGAAGGAGCTGCA
AATATGGGAACTCCAATGATGCCAGATAATGGAGCAGTGCACAATGATAGATTTCCGCAA
GGACCACCATCTCAGATGGGATCACCCATGGGCAGTAGAACAGGTTCGGAGACCCCCCAG
GCTCCGATGAGTGGCGTAGGCCCTGTGAGTGGTGGTCCTGGTGGTTTTGGTCGAGGAAGC
CAAGGCGGCAGCTTTGAAGGTCCCAATAAACGCCGTCGATACTAAGCGTTCTTGCCCTTC
CTGCCCACTTAGAGGAGAAGAAATGCTTTACCTGTGACCTAAAGAATGGTTTTCTTGTTA
TTGTATGTAGACATCAAGGGTTGTTTGTTTTTTTTTTTTTTTTGTTTTGTTTTTGTTTTT
TTTTTTTTTTGTTTTGTAAAACTTGAGGTTTTTGTATTTTTCTTTATTCATAAGCTTTGT
AGATTAGAATGGTAATGATGATACTCACCCTTGTGAATGTTCAAATGTGTTTGTGACTTC
AGCGACATAGAAGTTTGCCATAGTACTGTGAGTTCTGTGTAGTTTATCTCAATAAAGAAA
CCGTCTTGGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCCAGGCACGAGCACCAGTTGATGCTGATGAGGCAAGATTTAATGAGGCGTCAAGAA
GAACTCAGACGCTTGGAAGAACTAAGAAACCAAGAGCTGCAAAAACGGAAGCAAATACAG
CTAAGGCATGAGGAAGAGCATCGTCGTCGTGAGGAGGAAATGATCCGCCACCGGGAGCAG
GAGGAACTGCGGCGGCAGCAGGAGGGCTTTAAGCCGAACTATATGGAAAACAGAGAACAG
GAAATGAGAATGGGTGATATGGGTCCCCGTGGAGCAATAAACATGGGAGATGCGTTTAGC
CCAGCACCTGCTGGTAACCAAGGTCCTCCTCCAATGATGGGTATGAATATGAACAACAGA
GGAACTATACCTGGCCCGCCAATGGGTCCTGGTCCTGCCATGGGGCCAGAAGGAGCTGCA
AATATGGGAACTCCAATGATGCCAGATAATGGAGCAGTGCACAATGATAGATTTCCGCAA
GGACCACCATCTCAGATGGGATCACCCATGGGCAGTAGAACAGGTTCGGAGACCCCCCAG
GCTCCGATGAGTGGCGTAGGCCCTGTGAGTGGTGGTCCTGGTGGTTTTGGTCGAGGAAGC
CAAGGCGGCAGCTTTGAAGGTCCCAATAAACGCCGTCGATACTAAGCGTTCTTGCCCTTC
CTGCCCACTTAGAGGAGAAGAAATGCTTTACCTGTGACCTAAAGAATGGTTTTCTTGTTA
TTGTATGTAGACATCAAGGGTTGTTTGTTTTTTTTTTTTTTTTGTTTTGTTTTTGTTTTT
TTTTTTTTTTGTTTTGTAAAACTTGAGGTTTTTGTATTTTTCTTTATTCATAAGCTTTGT
AGATTAGAATGGTAATGATGATACTCACCCTTGTGAATGTTCAAATGTGTTTGTGACTTC
AGCGACATAGAAGTTTGCCATAGTACTGTGAGTTCTGTGTAGTTTATCTCAATAAAGAAA
CCGTCTTGGATA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               288-459, gnl|bosTau2|chr12 (20520495-20520324)
               

               
               288-459, gnl|Hg17|chr13 (19177973-19177802)
               

               
               288-459, gnl|Mm7|chr14 (51593196-51593025)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               288-459, gnl|bosTau2|chr12 (20520495-20520324)
               

               
               288-459, gnl|Hg17|chr13 (19177973-19177802)
               

               
               288-459, gnl|Mm7|chr14 (51593196-51593025)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)

	288-459, gnl\|bosTau2\|chr12 (20520495-20520324)
	288-459, gnl\|Hg17\|chr13 (19177973-19177802)
	288-459, gnl\|Mm7\|chr14 (51593196-51593025)

	amn (0.417711)
	elu (0.385356)
	fbs (0.175346)
	rec (0.17307)
	duo (0.172801)
	bfe (0.149858)
	lnt (0.142308)
	nca (0.136874)
	che (0.136314)
	bla (0.124347)
	nbm (0.0993246)