Non-Coding RNA Search

Ss1.1-Pig3-SRG8013M08.3

Sequence:


               
               CAGCAGTGACAGCAGTTCAGAGTCTTCTAGTGAGGAGAGTGATTCTTCATCCACCAGTAG
TCAGAGCTCGTCCTCAGCTAAAGATGTAAGAAAGAAGGGACAAGGGAATCCCAGAAGTAA
AGAAGTAGATAAATTAATCAGGAGACAACAAACAAATGATAGGAAACAAGAAGAAAGGCG
ACCAGAGCCACGGCACCAGGAAACGAGGACTGAGAGAGAAAGGAGGTCAGAGAAACCCAG
AGATAGAGATTCAAGAGATCCTGCAACAAAACACAGTTCTGACAGAGGGGTTCCTTCTGA
GCGAAATAGCTACAGCAGAGCCATGAATGACAGAGACTACGAAATGCACATAGATGTGGA
ACATAAGCACAGGGACCCCAAAAAGAAAAGAGGAGAGAGAAGAAATTCTTTTTCTGAAAA
TGAGCACAGACACCGAAATAGGGACAGTGAAAATTTTACAAGAAAAGAGAGGTCCAACTC
AAGAGAAAAGAGTAAAAAACATTCAGGTTCTAGAAGCGATGAAGATAGGTATCAGAATGG
TGCCGAGAGGCGATGGGAAAAATCTAGCCGATACTCTGAACAATCCAGAGAATCAAAGAA
AAATCAGGACCGACGAAAAGAAAAGTCTCCAACAAAGCAAAAAAAATAATTCGAAAAGAA
AAGTCTCCAATGAAGCAAAAAAAAAATTCTGCGAAATTACAGAAACTGAACATGCCTTAT
ATTCAGTTGAAACAAATTATTTTTTACATTGACGAACTTTATAGAGAATTCTTGTATAAA
GTCCTGATTTGTATTTGTACATTTAAAAAATGTTTTCATTTTAACATATTTTATAACTGA
TACATCTCAAGGCCCTCCACATAAAATTATTTGAAGAGTTTCACCAGAGAGGAATGTTAT
TCTTGCTTATATTTTGTTAATAAAATGATCAAATGCCTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAGTGACAGCAGTTCAGAGTCTTCTAGTGAGGAGAGTGATTCTTCATCCACCAGTAG
TCAGAGCTCGTCCTCAGCTAAAGATGTAAGAAAGAAGGGACAAGGGAATCCCAGAAGTAA
AGAAGTAGATAAATTAATCAGGAGACAACAAACAAATGATAGGAAACAAGAAGAAAGGCG
ACCAGAGCCACGGCACCAGGAAACGAGGACTGAGAGAGAAAGGAGGTCAGAGAAACCCAG
AGATAGAGATTCAAGAGATCCTGCAACAAAACACAGTTCTGACAGAGGGGTTCCTTCTGA
GCGAAATAGCTACAGCAGAGCCATGAATGACAGAGACTACGAAATGCACATAGATGTGGA
ACATAAGCACAGGGACCCCAAAAAGAAAAGAGGAGAGAGAAGAAATTCTTTTTCTGAAAA
TGAGCACAGACACCGAAATAGGGACAGTGAAAATTTTACAAGAAAAGAGAGGTCCAACTC
AAGAGAAAAGAGTAAAAAACATTCAGGTTCTAGAAGCGATGAAGATAGGTATCAGAATGG
TGCCGAGAGGCGATGGGAAAAATCTAGCCGATACTCTGAACAATCCAGAGAATCAAAGAA
AAATCAGGACCGACGAAAAGAAAAGTCTCCAACAAAGCAAAAAAAATAATTCGAAAAGAA
AAGTCTCCAATGAAGCAAAAAAAAAATTCTGCGAAATTACAGAAACTGAACATGCCTTAT
ATTCAGTTGAAACAAATTATTTTTTACATTGACGAACTTTATAGAGAATTCTTGTATAAA
GTCCTGATTTGTATTTGTACATTTAAAAAATGTTTTCATTTTAACATATTTTATAACTGA
TACATCTCAAGGCCCTCCACATAAAATTATTTGAAGAGTTTCACCAGAGAGGAATGTTAT
TCTTGCTTATATTTTGTTAATAAAATGATCAAATGCCTAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               497-616, - strand, RNAz p=0.956629

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               497-616, - strand, RNAz p=0.956629

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               75-652, gnl|bosTau2|chr2 (8263234-8262660)
               

               
               75-652, gnl|Hg17|chr2 (180635951-180635359)
               

               
               75-652, gnl|Mm7|chr2 (77740297-77739720)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-652, gnl|bosTau2|chr2 (8263234-8262660)
               

               
               75-652, gnl|Hg17|chr2 (180635951-180635359)
               

               
               75-652, gnl|Mm7|chr2 (77740297-77739720)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               thg (0.380373)
               

               
               spl (0.286369)
               

               
               kid (0.259471)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.380373)
               

               
               spl (0.286369)
               

               
               kid (0.259471)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	75-652, gnl\|bosTau2\|chr2 (8263234-8262660)
	75-652, gnl\|Hg17\|chr2 (180635951-180635359)
	75-652, gnl\|Mm7\|chr2 (77740297-77739720)

	thg (0.380373)
	spl (0.286369)
	kid (0.259471)
	sag (0.182715)
	gul (0.177588)
	ill (0.175593)
	rec (0.17307)
	lun (0.150489)
	lnt (0.142308)
	pla (0.133672)
	ese (0.126502)
	spc (0.113366)
	eje (0.0988338)